Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00131X
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55420| Best HMM Match : fn3 (HMM E-Value=0)                         29   1.6  
SB_39596| Best HMM Match : TTL (HMM E-Value=0)                         27   6.6  
SB_45258| Best HMM Match : RhoGEF (HMM E-Value=2.4e-05)                27   6.6  
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  

>SB_55420| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 789

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 248 SALIAECESVQEFLTDCDDSSNPAPVELKVL--LPDRDVATVSVLRSTRADLVYR 406
           S ++   +S++  + +   S +P P  +KVL  L DRD+   S L   R DL YR
Sbjct: 673 SCVMGHTQSLENIIPNVTLSGSPGPESIKVLITLKDRDILLDSGL-LVRYDLQYR 726


>SB_39596| Best HMM Match : TTL (HMM E-Value=0)
          Length = 808

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 61  PGEQTLHRCFMYSTTQSIPK 120
           P ++ LHRC+M+ T  S+ K
Sbjct: 467 PSQKNLHRCYMHLTNYSLNK 486


>SB_45258| Best HMM Match : RhoGEF (HMM E-Value=2.4e-05)
          Length = 322

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 309 ELSSQSVRNSCTLSHSAISALRTPASVCS 223
           E+ S +++N   LSH A+     P S+CS
Sbjct: 46  EICSYAIKNVSMLSHQALKKRPPPESMCS 74


>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1020

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -3

Query: 276 TLSHSAISALRTPASVCSSSC---ILVLRAEXSKSVLTFHCLRTTNGR 142
           TL+HS I+   TP S CS +C     +LR + S     + C R   GR
Sbjct: 491 TLNHSLITWNNTPISRCSQACRAGFYILR-KPSDPPCCWECRRCPFGR 537


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,915,545
Number of Sequences: 59808
Number of extensions: 192781
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)