Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00125
(806 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 159 3e-39
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 2e-36
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 5e-33
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 5e-33
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 98 8e-21
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 86 4e-17
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 8e-17
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 82 4e-16
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 81 1e-15
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 77 1e-14
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 52 4e-07
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 37 0.017
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2) 32 0.63
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 31 0.83
SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035) 30 1.9
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19) 30 1.9
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 30 2.5
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56) 29 5.9
SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05) 29 5.9
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 159 bits (385), Expect = 3e-39
Identities = 70/103 (67%), Positives = 82/103 (79%)
Frame = +1
Query: 217 QGLHFPSCHPQFQLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 396
+G F PQF QGGDFT HNGTGGKSIYG KFEDENF LKHTG GVLSMAN+G +TN
Sbjct: 182 KGSSFHRIIPQFMCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTN 241
Query: 397 GSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFAASLGR 525
GSQFF+TT KT WLDG+HVVFGNV+EG +VV+++E + G+
Sbjct: 242 GSQFFLTTEKTDWLDGKHVVFGNVIEGFDVVRKMEAVGSQSGK 284
Score = 99.5 bits (237), Expect = 3e-21
Identities = 42/62 (67%), Positives = 49/62 (79%)
Frame = +2
Query: 83 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFSCK 262
PRVFFD+T+ + G+IV+ELRSDV P T ENFR LCT EKGFGYKGS FHR+IP F C+
Sbjct: 137 PRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQ 196
Query: 263 EG 268
G
Sbjct: 197 GG 198
Score = 32.7 bits (71), Expect = 0.36
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3
Query: 510 SQSGKTSKRIVIKDCGQIA 566
SQSGK SK++VI DCG+++
Sbjct: 280 SQSGKASKKVVIDDCGELS 298
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 149 bits (362), Expect = 2e-36
Identities = 68/103 (66%), Positives = 79/103 (76%)
Frame = +1
Query: 217 QGLHFPSCHPQFQLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 396
+G F P F QGGDFT +GTGGKSIYG KF DENF LKHTGPG+LSMANAG TN
Sbjct: 48 KGSSFHRVIPGFMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTN 107
Query: 397 GSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFAASLGR 525
GSQFF+ T KTSWLDG+HVVFG+V +GM+VVK+IE + G+
Sbjct: 108 GSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKIEKVGSDSGK 150
Score = 99.5 bits (237), Expect = 3e-21
Identities = 42/59 (71%), Positives = 48/59 (81%)
Frame = +2
Query: 92 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFSCKEG 268
+FD+ + AP G+IV+ELR DV PKT ENFRALCTGEKGFGYKGS FHRVIP F C+ G
Sbjct: 6 YFDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGG 64
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 138 bits (334), Expect = 5e-33
Identities = 64/97 (65%), Positives = 76/97 (78%), Gaps = 1/97 (1%)
Frame = +1
Query: 250 FQLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKT 429
F +QGGDFTN +GTGG SIYG F+DENF LKH GPG L MANAG +TNGSQF+ITT+KT
Sbjct: 82 FMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKT 141
Query: 430 SWLDGRHVVFGNVVEGMEVVKQIE-TFAASLGRPLRE 537
SWLDG H FG V+EGM+VV++IE T + +PL E
Sbjct: 142 SWLDGSHTCFGKVLEGMDVVRRIENTRVDTHDKPLDE 178
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/61 (49%), Positives = 40/61 (65%)
Frame = +2
Query: 86 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFSCKE 265
+V+ DV++ P G++++ L D PKT NF AL E+GFGYK SIFHRVI NF +
Sbjct: 27 KVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQG 86
Query: 266 G 268
G
Sbjct: 87 G 87
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 138 bits (334), Expect = 5e-33
Identities = 73/127 (57%), Positives = 85/127 (66%), Gaps = 2/127 (1%)
Frame = +1
Query: 250 FQLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKT 429
F +QGGDFT +GTGGKSIYG KF DENF L+H G G LSMANAG DTNGSQFFITTVKT
Sbjct: 101 FMIQGGDFTKGDGTGGKSIYGQKFADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKT 160
Query: 430 SWLDGRHVVFGNVVEGMEVVKQIET--FAASLGRPLRESLSKTVVRXXXXXXXXXXXXQY 603
WLDGRHVVFG V++GMEV + FA +L P R L+K + +Y
Sbjct: 161 PWLDGRHVVFGKVLKGMEVGTWDQNCYFAHALFVPFR--LNKCLSNDTHRVCATFSISRY 218
Query: 604 FKLNTKS 624
+NT+S
Sbjct: 219 RVINTRS 225
Score = 37.9 bits (84), Expect = 0.010
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 18/79 (22%)
Frame = +2
Query: 86 RVFFDVTVDDAPLGKI------VIELRSDVTPKTCE-----NFRAL-----CT--GEKGF 211
+VFFD+T+ G+I +I+ + + E NFR CT +KGF
Sbjct: 28 KVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIGTNFRYFDTYYCCTIESQKGF 87
Query: 212 GYKGSIFHRVIPNFSCKEG 268
GYK SIFHRVI +F + G
Sbjct: 88 GYKNSIFHRVIQDFMIQGG 106
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 97.9 bits (233), Expect = 8e-21
Identities = 45/73 (61%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Frame = +1
Query: 283 NGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVF 459
+GTGG+SI+G +FEDE + L+H P +SMANAG +TNGSQFFIT V T WLD +H VF
Sbjct: 2 DGTGGESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVF 61
Query: 460 GNVVEGMEVVKQI 498
G VV+GM+V +QI
Sbjct: 62 GRVVKGMDVAQQI 74
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 85.8 bits (203), Expect = 4e-17
Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Frame = +1
Query: 232 PSCHPQFQLQGGDFTNH----NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNG 399
P+C+ +Q H G GG+S+YG FEDE+F++ H GV+ MAN G TNG
Sbjct: 24 PACNISSLVQRWKVCKHIEGGRGIGGESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNG 83
Query: 400 SQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 501
SQF+IT W+D ++V FG V+EG+ V+ +E
Sbjct: 84 SQFYITLQPAPWMDTKYVAFGQVIEGLNVLDVLE 117
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 84.6 bits (200), Expect = 8e-17
Identities = 37/55 (67%), Positives = 45/55 (81%)
Frame = +1
Query: 370 MANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFAASLGRPLR 534
MANAG DTNGSQFFITTVKTSWLDG+HVVFG V+EGM+VV+++E P++
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLENVNVKGSTPVK 55
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 82.2 bits (194), Expect = 4e-16
Identities = 36/53 (67%), Positives = 46/53 (86%)
Frame = +1
Query: 343 KHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 501
+H PG+LSMAN+G +TNGSQFFITTV T LDGRHVVFG V++GM+VV+++E
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELE 240
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 81.0 bits (191), Expect = 1e-15
Identities = 42/74 (56%), Positives = 51/74 (68%)
Frame = +1
Query: 283 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 462
NGTGG+SIYG F DE F KH P +LSMAN G +TNGSQFFI HVVFG
Sbjct: 25 NGTGGESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFG 74
Query: 463 NVVEGMEVVKQIET 504
+V++G E+V+QIE+
Sbjct: 75 HVIQGEELVRQIES 88
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 77.4 bits (182), Expect = 1e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +1
Query: 361 VLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 498
+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +GM+VVK++
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 52.4 bits (120), Expect = 4e-07
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 8/46 (17%)
Frame = +2
Query: 125 GKIVIELRSDVTPKTCENFRALCTGEKGFG--------YKGSIFHR 238
G+++ EL +D PKT ENFRALCTGEKG G YKG FHR
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 41.5 bits (93), Expect = 8e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 346 HTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 462
H G +SMAN G ++NGSQFFI K LD ++ +FG
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFG 339
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 37.9 bits (84), Expect = 0.010
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +2
Query: 122 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFSCKEG 268
LG+I IEL +D P + NF A + G+ Y G+ FHRVIP F + G
Sbjct: 32 LGEIEIELDADKAPISTANFLAYV--DSGY-YAGTQFHRVIPGFMVQGG 77
Score = 35.9 bits (79), Expect = 0.039
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Frame = +1
Query: 220 GLHFPSCHPQFQLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGA-DTN 396
G F P F +QGG F + + ++E H G L+MA D+
Sbjct: 62 GTQFHRVIPGFMVQGGGF---DADMQQKDTQAPIKNEADNGLHNVRGTLAMARTQVRDSA 118
Query: 397 GSQFFITTVKTSWLDGR-----HVVFGNVVEGMEVVKQI 498
SQFFI ++LD + VFG VV+GM+VV +I
Sbjct: 119 TSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKI 157
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 37.1 bits (82), Expect = 0.017
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 122 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVI 244
+G I IEL TPK C NF LC +G+ Y +IFHR++
Sbjct: 12 VGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIV 49
>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
Length = 175
Score = 31.9 bits (69), Expect = 0.63
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +1
Query: 448 HVVFGNVVEGMEVVKQIET 504
HVVFG+V++G E+V+QIE+
Sbjct: 3 HVVFGHVIQGEELVRQIES 21
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -1
Query: 488 TTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 351
TT PST P T PS+ E +T WEP P PGP
Sbjct: 34 TTGEPSTWEPMTGA-PSTWEPMTGAPSTWEPWTDGPGPYPTDGPGP 78
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 461 PKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 351
P TT PS+ E +T WEP+ AP+ T GP
Sbjct: 32 PFTTGEPSTWEPMTGAPSTWEPMTGAPSTWEPWTDGP 68
>SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 31.5 bits (68), Expect = 0.83
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 491 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 351
L+ + + FP TT P + + T + EPL+ P +R P P
Sbjct: 13 LSATQLTAAFPTTTTTPVTTQTTTTDVSRTEPLIELPTAQEKRKPCP 59
>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
Length = 885
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 116 APLGKIVIELRSDVTPKTCENFRALCTG 199
AP I+I L S V+PKT E+ R LC G
Sbjct: 569 APKIDIIIALDSGVSPKTFEDERQLCAG 596
>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
Length = 259
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = -1
Query: 464 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 351
FP+ + LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPSLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 157 DVTSQL-NNNFSQWGIVNSDVEEYSW*RHFAGISNVSNLQNHHNDNA 20
DV S L S WGI + D+E+ W + I+ L++ H D+A
Sbjct: 90 DVCSTLFQEELSYWGINDRDMEQCCWAHYKRQINTEETLKSFHLDSA 136
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -2
Query: 163 GSDVTSQLNNNFSQWGIVNSDVEEYSW*RHFAGISNVSNLQNHHNDNASLVNAG 2
G++ + NNN++ GI N++ Y+ +G SN N N +N+NA N G
Sbjct: 352 GANNNNNKNNNYNS-GINNNNNNNYN-----SGSSNGRNTNNGNNNNAGTSNVG 399
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -1
Query: 464 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 351
FP+ LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPPLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 195 VHRARKFSHVLGV--TSLLSSITIFPSGASSTVTSKNTRGRDILPV 64
+ + KF+H+ G+ TS T+F +T T TR RD++ +
Sbjct: 168 IQQLHKFTHIHGMLSTSSRGRYTLFRGQYDTTATQIYTRSRDVIDI 213
>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
Length = 1566
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 150 VTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISA 257
VT LP VK + + ASVT P S+ P+SA
Sbjct: 1224 VTQLPVSVKHLLTSVMHLHASVTHLPASVTQLPVSA 1259
>SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)
Length = 1382
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 215 YKGSIFHRVIPNFSCKEGTSPTITALGESPSTAISLKTRISPLSTLDLASSPWLMPVLIL 394
+K F+R+I SC++ S T A G T + +I S + P P L++
Sbjct: 121 FKQMNFNRIIRKLSCRKTISSTWNANGHKTKTGRTTSLKIKTSSRISFTRLPRSKPSLMV 180
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 557 TTVFDNDSLRGLPRLAAKVSICLTTSMP-STTFPKTTCLPSSQEV 426
T+ D ++RG + ++ TT +P +TT P+TT +P + V
Sbjct: 2205 TSASDTTAVRGTTAVPESTAVPGTTVVPETTTLPETTAVPETTAV 2249
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,456,534
Number of Sequences: 59808
Number of extensions: 597802
Number of successful extensions: 1769
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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