Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00123
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48898| Best HMM Match : Complex1_17_2kD (HMM E-Value=7.6)           32   0.66 
SB_37784| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)               29   6.1  
SB_42716| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_48898| Best HMM Match : Complex1_17_2kD (HMM E-Value=7.6)
          Length = 165

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 482 IYHLKLAKSYCHEHMRPNGVYIMELYHRRELVENKILIRGRIQSRH 345
           + H + ++SY  E+    GV +M  YHRR L EN  L     + RH
Sbjct: 3   VRHWEYSRSYNVEYSSRRGVDLMS-YHRRRLAENTSLHPWNFRGRH 47


>SB_37784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = -3

Query: 530 RFSTINLHELFLFTLGIYHLKLAKSYCHEHMRPNGVYIMELYHR---RELVENKILIRGR 360
           R  TINL   F   L  YH+K +K+Y H  MR      +++ +R         K  I G 
Sbjct: 134 REGTINLIHTFRNYLH-YHIKCSKAYLHTRMRARTADFIKILNRARPEPKTTEKKTITGL 192

Query: 359 IQSRHI 342
            Q  H+
Sbjct: 193 TQDYHV 198


>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
          Length = 1737

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 479 YHLKLAKSYCHEHMRPNGVYIMELYHRRELVENKILIRGRIQS 351
           YH  L ++ CH    P  + +    HRR+++  + L   R+QS
Sbjct: 66  YHTSLCENDCHYKHHPLTLVVGLTRHRRQVLHQRPLKMSRMQS 108


>SB_42716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 458 SYCHEHMRPNGVYIMELYHRRELVENKILIRGRIQSRHIRA-KRYYT 321
           SY  E+ R  G  +M  YHR  L EN  L +  I+ RH    KR +T
Sbjct: 320 SYAVEYPRRRGYDLMS-YHRGRLAENTSLHQWIIRGRHENTNKRGFT 365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,780,938
Number of Sequences: 59808
Number of extensions: 507518
Number of successful extensions: 2004
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2003
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)