Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00111
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             164   7e-41
SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055)                   29   3.8  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   5.0  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      29   5.0  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   8.8  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_18927| Best HMM Match : GAF (HMM E-Value=0.18)                      28   8.8  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  164 bits (398), Expect = 7e-41
 Identities = 73/84 (86%), Positives = 78/84 (92%)
 Frame = +2

Query: 2   RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
           RGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV 
Sbjct: 427 RGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVK 486

Query: 182 KIVKQRLIKVDGKVRTDPTYPAGY 253
           KIVKQRLIK+DGKVRTD TYPAG+
Sbjct: 487 KIVKQRLIKIDGKVRTDTTYPAGF 510



 Score =  128 bits (310), Expect = 3e-30
 Identities = 58/91 (63%), Positives = 71/91 (78%)
 Frame = +1

Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
           DVV+I+KT E +RL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTI
Sbjct: 512 DVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTI 571

Query: 436 RYPDPLIKVNDSIQLDIATTKIMDSSSLSPG 528
           RYPDP IKVND++ +DI T K++D      G
Sbjct: 572 RYPDPNIKVNDTVVIDIKTGKVIDYIKFDTG 602



 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 39/61 (63%), Positives = 51/61 (83%)
 Frame = +3

Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKAR 689
           IKF++GN+ M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGK  
Sbjct: 597 IKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGN 656

Query: 690 R 692
           +
Sbjct: 657 K 657


>SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055)
          Length = 443

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 563 ACGHH-RVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGTKAYIS 703
           ACG   R+P + S L R+CA  G +GT    E  +    + GTK   S
Sbjct: 245 ACGSFVRLPEDDSILTRNCAKWGSNGTLPEGEWGKNALLKDGTKTETS 292


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +1

Query: 139 EES--SEVCFDRKRSPENCE 192
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +1

Query: 238 LSCWI*DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 417
           L  W+    S  K N +Y  I D+  R  I  +TP+    K C+V R++TGP    +++ 
Sbjct: 261 LGGWVATRASGMKKN-VYGNIEDIIVR--IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMG 317

Query: 418 HDG 426
            +G
Sbjct: 318 SEG 320


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 138 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPR 1
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPR 106


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 216 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 100
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_18927| Best HMM Match : GAF (HMM E-Value=0.18)
          Length = 234

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 274 KTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 384
           KTNELY  I+D+ G     R +  + + +  K K VA
Sbjct: 145 KTNELYARIFDIGGSLEDSRSSQLQKEIRFPKTKGVA 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,116,730
Number of Sequences: 59808
Number of extensions: 607125
Number of successful extensions: 1772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)