Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00107
         (465 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)              69   3e-12
SB_45611| Best HMM Match : p450 (HMM E-Value=0)                        28   3.3  
SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_7606| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
          Length = 100

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 30/41 (73%), Positives = 37/41 (90%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 378
           ELL++ KDKRALKF K+RLGTH+R KRKREE+++VLA MRK
Sbjct: 53  ELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 34/69 (49%), Positives = 40/69 (57%)
 Frame = +2

Query: 71  IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 250
           +AVGL+KGHK TK             + +P+R KG   K  KFVRD+VREVVG A YEKR
Sbjct: 1   MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50

Query: 251 ARSYLRCQK 277
               LR  K
Sbjct: 51  VMELLRIGK 59


>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
          Length = 847

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +1

Query: 271 SKDKRALKFLKRRLGTHIRAKRKREELSN 357
           +K  RALKFLK RL   +R KR  E L N
Sbjct: 59  NKSPRALKFLKTRL-QDLRKKRDSETLRN 86


>SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 705

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -3

Query: 184 RLKTL*SSWPNS----DGFVCDTLAASGYFSCFVAFSQAYCDFKTRSHDFGLTD 35
           RLK++  SW N+     G  CD   A+G F   V FS  +   K R H     D
Sbjct: 440 RLKSMRWSWENARTSKGGQSCDDPDATGDFEDEVTFSDPHLQKKFRRHSLKTLD 493


>SB_7606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 188 HSKFVRDLVREVVGHAQYEKRARSYLRC 271
           + KF++D++R+VV +  +    RS  RC
Sbjct: 178 NKKFIKDILRDVVANGVHPPAIRSRQRC 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,266,872
Number of Sequences: 59808
Number of extensions: 201757
Number of successful extensions: 548
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)