Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00104
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)             96   2e-20
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               33   0.30 
SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    31   0.92 
SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.8  
SB_25940| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)             28   6.5  
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)         28   6.5  
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)                 28   6.5  
SB_34635| Best HMM Match : PE (HMM E-Value=0.82)                       28   8.6  
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  

>SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)
          Length = 205

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 42/61 (68%), Positives = 51/61 (83%)
 Frame = +3

Query: 327 KVSVREEGVRGLAN*WAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFVYLA 506
           K++++E+GVRGLA  WAPTFIGYSMQGL KFGFYEVFK+ Y  ML +E +Y YRT +YLA
Sbjct: 98  KITLKEDGVRGLARGWAPTFIGYSMQGLGKFGFYEVFKIMYGNMLGEEYSYLYRTSLYLA 157

Query: 507 A 509
           A
Sbjct: 158 A 158



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 31/77 (40%), Positives = 38/77 (49%)
 Frame = +2

Query: 32  MFSSLLDAARNSPFRGPLSPAQCQSTVAPVAIEQTGGMAASAAVPTESCEFGSPKYFAXX 211
           MFS   + A+NS    PLS A+C S V   +   +  + ASAA    SCEFGS KY+A  
Sbjct: 1   MFSRYFETAKNSTLGDPLSVAKCPSDVR--SHRNSSRLMASAAGEQHSCEFGSAKYYALC 58

Query: 212 XXXXXXXXXXTHTAGCP 262
                     THTA  P
Sbjct: 59  GFGGILSCGLTHTAVVP 75



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +1

Query: 256 VPLXLVKCRLQVDAEKYKNVVNGLR 330
           VPL LVKCR+QVD +KY ++VNG +
Sbjct: 74  VPLDLVKCRIQVDPKKYGSMVNGFK 98



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +2

Query: 509 SASAEFIADIALSPMEALR 565
           SASAEF ADIAL+PMEA++
Sbjct: 159 SASAEFFADIALAPMEAVK 177



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +1

Query: 562 KVRIQTMPGFASTLRE 609
           KVRIQT PG+A TLRE
Sbjct: 177 KVRIQTQPGWAGTLRE 192


>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 234 HDRXXPTPQRAKYLGDPNSQDSVGTAADAAMPPVCSIATGATVDWHWAGDSG 79
           H    P P RA  L  P  + S G+ A+ A PP   +ATG +  +     SG
Sbjct: 811 HSLLHPPPGRASQL--PLQEQSSGSRAEEASPPPALVATGPSASYRLPNASG 860


>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 264 EGHPAVWVRPHDRXXPTPQRAKYLGD--PNSQDSVGTAADAAMPPVCSIATGATVD 103
           +G   V VRPHD+  P  Q+++Y+ D   NS   +    + A P V S      +D
Sbjct: 32  QGVRLVAVRPHDQVSPRQQQSQYIHDLLNNSYPIIPKVGEPASPYVSSPRESVLID 87


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 264  EGHPAVWVRPHDRXXPTPQRAKYLGD--PNSQDSVGTAADAAMPPVCSIATGATVD 103
            +G   V VRPHD+  P  Q+++Y+ D   NS   +    + A P V S      +D
Sbjct: 1613 QGVRLVAVRPHDQVSPRQQQSQYIHDLLNNSYPIIPKVGEPASPYVSSPRESVLID 1668


>SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -1

Query: 186 PNSQDSVGTAADAAMPPVCSIATGATVDWHWAGD-SGPRNGEFRAASSNEENIIM 25
           P  Q    T   A  PPV    +G+  D  W GD S P+  + R+      N +M
Sbjct: 398 PQPQKPPATRPSATPPPVTGDESGSDYDEDWGGDWSEPKPTQSRSIVGEMRNDLM 452


>SB_25940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 100 PVDGRARGYRADRWHGGVCCG 162
           P +G+ RG+R     GGVCCG
Sbjct: 91  PREGQIRGFRFVHISGGVCCG 111


>SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 98  CQSTVAPVAIEQTGGMAASAAVPTES 175
           C ST  PV  +QT   A+SA VPT S
Sbjct: 154 CLSTARPVTTQQTKKPASSAFVPTTS 179


>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
          Length = 95

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 609 AWPKMVKNEGYGTFYKGLVPLWGRQIPYTMMKF 707
           A+ ++ ++EG  TFY+G VP     +PY  + F
Sbjct: 31  AFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISF 63


>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
          Length = 192

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 618 KMVKNEGYGTFYKGLVPLWGRQIPYTMMKF 707
           ++V+NEG    +KG  P + R  P+T++ F
Sbjct: 142 RIVRNEGVFALWKGFTPYYFRIGPHTVLTF 171


>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
          Length = 519

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 586 GFASTLRERGRRWSRTKVTARSTRAW-CRSGADRSRTR 696
           G  S+L   GR W R    + S ++W  R  A+R R R
Sbjct: 221 GLGSSLGSMGRDWGRMSTNSPSFQSWFSREMAERGRER 258


>SB_34635| Best HMM Match : PE (HMM E-Value=0.82)
          Length = 436

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 512 ASAEFIADIALSPMEALRSVSKPCLVSRAPSASVAEDGQERR 637
           AS     D A + + ALRS +K CLV   PSAS  E  + ++
Sbjct: 226 ASLLVFRDFASTHLYALRSSAK-CLVVDDPSASAGEKAENKK 266


>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 6/24 (25%), Positives = 17/24 (70%)
 Frame = +3

Query: 618 KMVKNEGYGTFYKGLVPLWGRQIP 689
           ++++N+G+   ++G+   W R++P
Sbjct: 159 QIIRNDGFQGLFRGMTATWAREVP 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,239,150
Number of Sequences: 59808
Number of extensions: 477522
Number of successful extensions: 1239
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)