Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00095
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13989| Best HMM Match : Myb_DNA-binding (HMM E-Value=9.6e-24)       99   2e-21
SB_58299| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.42)             33   0.27 
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)                  31   0.82 
SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 

>SB_13989| Best HMM Match : Myb_DNA-binding (HMM E-Value=9.6e-24)
          Length = 478

 Score =   99 bits (238), Expect = 2e-21
 Identities = 58/141 (41%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
 Frame = +2

Query: 308 QHDRILMEAQNVMALTHVDTPLKGGLNTPLHESDFSGALPQNQVVATPNTVLATPFRS-S 484
           + D +L EAQN++AL++VDTPLKGGLNTP+HESDF G  P+ Q + TPN +L+TP+R+  
Sbjct: 341 EQDTVLQEAQNILALSNVDTPLKGGLNTPMHESDFQGVTPRQQAIQTPNMLLSTPYRTPG 400

Query: 485 RSEVSTPGVLTLQDMAIVSLG*PQACEINLISTLKTE*MVVTLLKFPINFK---NKPKTS 655
               STP        AI   G P    +     +  E  V+   +     K   ++ K  
Sbjct: 401 EGSGSTPRQGMTPRGAI---GTPSQRSVRDKLNINPEDAVMEEYESECAAKQQQSEAKEQ 457

Query: 656 VRNALQSLPVPRNDYEIVVPE 718
           +   L SLP P ND+EIV+PE
Sbjct: 458 LLAGLASLPAPSNDFEIVLPE 478



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 5/44 (11%)
 Frame = +3

Query: 75  NDVPQAMLQ-----GDAPARKRSKLVLPEPQVTDQELQQVVKLG 191
           +D+P A++Q          +KRSKLVLP+PQ++D EL+++VK+G
Sbjct: 256 SDLPGAVMQINKMNNPDHVKKRSKLVLPKPQISDGELEEIVKMG 299


>SB_58299| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.42)
          Length = 329

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +2

Query: 620 FPINFKNKPKTSVRNALQSLPVPRNDYEIVVPEQEA 727
           FP+  +++ K  +   L SLP P ND+EIV+PE  A
Sbjct: 5   FPL--QSEAKEQLLAGLASLPAPSNDFEIVLPETPA 38


>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
          Length = 1420

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 605 VTLLKFPINFKNKPKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDS 748
           +TL   P +    P TS+  +    P+PR+DYE   P +    ++DDS
Sbjct: 173 MTLADSPSSSHGSPHTSITGSPCPSPMPRDDYE---PSESGESEQDDS 217


>SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 114 PEHHLV-AWLVAHHFPCVVLTFAYPCDVLSPLSQNVI 7
           PE HL+  W V    PC V+   YPC V+ P+S  V+
Sbjct: 675 PEGHLLPCWRVVLKHPCRVV-LKYPCRVIVPVSWRVV 710


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,700,140
Number of Sequences: 59808
Number of extensions: 485061
Number of successful extensions: 1674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1672
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)