Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00092
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              192   2e-49
SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)             29   3.0  
SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)         29   4.0  
SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)              28   9.2  
SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  192 bits (469), Expect = 2e-49
 Identities = 98/157 (62%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
 Frame = +1

Query: 223 QTREHLLVF-FTIKEFEIIDFFLGPSMNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDKQR 399
           +T EH+ +F   IKEFEIIDFFLG ++ DEVLKIMPVQKQTRAGQRTRFKAFVAIGD   
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 400 SYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKRLLGYKIGKPHTVPCKVTGKCGSVTVRL 579
               G +  +              +      +   G KIGKPHTVPCKVTGKCGS  VRL
Sbjct: 84  HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSTRVRL 143

Query: 580 FPATRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 690
            PA RGTGIVSAPVPKKLLQMAG++DCYTS RG T T
Sbjct: 144 IPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTAT 180



 Score =  109 bits (261), Expect = 3e-24
 Identities = 60/123 (48%), Positives = 80/123 (65%), Gaps = 4/123 (3%)
 Frame = +2

Query: 173 WVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSL---ISSSARP*MMRF*RSCLYRNKH 343
           WVPVTKLGRLV++ KI  LE IYLFSL  K    +   + ++ +  +++     + +   
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKI--MPVQKQTR 65

Query: 344 VPDSAHVSRHLLPLATNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGTR-SE 520
                   +  + +  +NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWG +  +
Sbjct: 66  AGQRTRF-KAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGK 124

Query: 521 SHT 529
            HT
Sbjct: 125 PHT 127


>SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)
          Length = 394

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -2

Query: 657 VLYTSHLKKLLRNWRRHNSSTTSCRKXPDCYRTTLAGDLARDGVWLSDLV 508
           +LYT +  +  RN++ +N+  T CR+  +   TT+   L  D   LS LV
Sbjct: 36  LLYTRNSTRTARNYQYYNTRQTLCRQR-ETINTTIHAKLYTDSEKLSILV 84



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -2

Query: 657 VLYTSHLKKLLRNWRRHNSSTTSCRKXPDCYRTTLAGDLARDGVWLSDLV 508
           +LYT +  +  RN++ +N+  T CR+  +   TT+   L  D   LS LV
Sbjct: 285 LLYTRNSTRTARNYQYYNTRQTLCRQR-ETINTTIHAKLYTDSEKLSILV 333



 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 654 LYTSHLKKLLRNWRRHNSSTTSCRKXPDCYRTTLAGDLARDGVWLSDLV 508
           LYT +  +  RN++ +N+  T CR+  +   TT+   L  D   LS LV
Sbjct: 145 LYTRNSTRTARNYQYYNTRETLCRQR-ETINTTIHAKLYTDSEKLSILV 192


>SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)
          Length = 798

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 628 KLLQMAGVQDCYTSARGSTGT--WEILLKPHMLPLPRHMPNL 747
           KL ++ G+          TGT  W +  +PH+LP P  +P +
Sbjct: 307 KLKRLCGLTQTVKVLTRDTGTLDWVLTNRPHLLPSPAQLPKI 348


>SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/48 (31%), Positives = 18/48 (37%)
 Frame = -3

Query: 659 QSCTPAI*RSFLGTGADTIPVPRVAGXSRTVTEPHLPVTLQGTVCGFP 516
           +SC PA    + G G D        G   + TEPH     QG     P
Sbjct: 144 RSCGPAFGDPWFGCGRDLFIADNAGGNKASCTEPHKYARPQGATSDGP 191


>SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)
          Length = 389

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
 Frame = +3

Query: 360 TFQGICCHWRQTTVILV---WV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVQDRKATH 530
           T+Q I  H   T  I     W+    R   + +E   ++L  LFY             T 
Sbjct: 192 TYQSIGFHTISTWTIRGVSRWISYLTRCFTVLYEVFHNILYGLFYSITRGEPAYHSYWTM 251

Query: 531 RPLQGHRQVWFCNSPAXSC 587
            P   H Q + CN+   +C
Sbjct: 252 SPYSAHAQSYICNTSCEAC 270


>SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 670

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 513 DRKATHRPLQ--GHRQVWFCNSPAXSCNSW 596
           DRK    PL   G+  VWF N P  + N+W
Sbjct: 10  DRKLRALPLYLAGNASVWFNNHPRAALNTW 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,312,090
Number of Sequences: 59808
Number of extensions: 538256
Number of successful extensions: 1467
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)