Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00087
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)           28   6.2  
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)                   28   8.3  
SB_40517| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25)            28   8.3  

>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 251 AASPGLSTPPKDSSLPTDILKILTTFKISSVSLV 352
           A  P   TP + S LPT +  ILTT    S++L+
Sbjct: 781 AILPATPTPTETSMLPTQVKSILTTVLTGSMTLM 814


>SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 613 VARRATRTSSKITSRANSNSYSTKK 687
           + R+A +T  K+ SRA + +Y TKK
Sbjct: 429 IPRKAYKTGQKLPSRAGTGTYCTKK 453


>SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)
          Length = 750

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 609 LYANDMAFLMPCETSRETTSRQTPEPWLSSSCAHLH 502
           L  N M FLMP   SR+  +   P P    SC  L+
Sbjct: 34  LPVNSMEFLMPSRLSRKEPTITLPNPSPERSCRRLY 69


>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
          Length = 1655

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
 Frame = -1

Query: 378  PGSIV*ALFTKLTLEILNVVRIFRISVGNDES---FGGVDNPGD 256
            P  +V A  T LTL I+++V +F +++G+DE    +GG D+  D
Sbjct: 1302 PNGVVVA--TMLTLVIVSLVVMFSMTMGDDEDVCCYGGGDDDDD 1343


>SB_40517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 248 AAASPGLSTPPKDSSLPTDILKILTTFKISS-VSLVKRAYTMEPGTNCPQ 394
           AAA    S  P+  + PT+    LT F  ++ V L+K    + PG N  Q
Sbjct: 109 AAAQEAASEEPEKEAEPTEFTVKLTGFDAAAKVKLIKEIKNLIPGMNLVQ 158


>SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25)
          Length = 305

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 248 AAASPGLSTPPKDSSLPTDILKILTTFKISS-VSLVKRAYTMEPGTNCPQ 394
           AAA    S  P+  + PT+    LT F  ++ V L+K    + PG N  Q
Sbjct: 256 AAAQEAASEEPEKEAEPTEFTVKLTGFDAAAKVKLIKEIKNLIPGMNLVQ 305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,451,119
Number of Sequences: 59808
Number of extensions: 384845
Number of successful extensions: 1163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)