Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00086
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               30   1.5  
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)               29   2.6  
SB_37480| Best HMM Match : rve (HMM E-Value=4.7e-22)                   29   3.4  

>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 403

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 246 FELSVRASPGRKYDPLLRFPTYSKLYR*AGPPALHWRTL 130
           F +S++ASP   Y+PL R PT   L     PP   ++ L
Sbjct: 289 FLVSLQASPSYPYNPLPRIPTSLSLVSLQAPPLYTYKPL 327


>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
          Length = 379

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -2

Query: 240 LSVRASPGRKYDPLLRFPTYSKLYR*AGPPALHWRTLWYAGKLNKASPVASTI*DRPSTA 61
           +S++ASP   Y PL R PT   L     PP+  ++ L    +++  SP   ++  RPS  
Sbjct: 62  VSLQASPSYPYKPLPRIPTSLSLVSLQAPPSYPYKPL---PRIH-TSPSLVSLQARPSYP 117

Query: 60  FK 55
           +K
Sbjct: 118 YK 119


>SB_37480| Best HMM Match : rve (HMM E-Value=4.7e-22)
          Length = 900

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 351 LLHSLIFFGVXRFEYVGKLISVSWALHFVFIYFISFE 241
           LL S++FFGV R    G +++ SW    V +    FE
Sbjct: 829 LLLSILFFGVVRLGKTGDVLAASWLSFEVILKCYVFE 865


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,376,249
Number of Sequences: 59808
Number of extensions: 448319
Number of successful extensions: 910
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)