Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00080
         (317 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_16077| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  

>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 125  LVERFVWLIPVTNETLAC 178
            LV RFV ++PVT+ T AC
Sbjct: 1290 LVARFVRMLPVTHHTAAC 1307


>SB_16077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 67  LTD*QLFLDSVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLG 201
           +T+  L LD++G   W  ++   + L      +D+SLL   RY G
Sbjct: 62  VTNEALELDTLGSRGWVRILTSLLLLYGHLAIKDTSLLRTPRYYG 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,118,672
Number of Sequences: 59808
Number of extensions: 162930
Number of successful extensions: 352
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)