Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00078
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.018
SB_5276| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=1.1)             29   3.7  
SB_4127| Best HMM Match : TFIIF_beta (HMM E-Value=4.4)                 29   4.9  

>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 17/55 (30%), Positives = 32/55 (58%)
 Frame = +1

Query: 34  LRRGDCGYFAMKLLLRFRDEYNRNPDPARRKDDINLLLKMRDEIVRELSLPASFI 198
           L+R    YF ++++LRFR ++ R PD  +R  D   L  ++ E++ +L++    I
Sbjct: 168 LKRLPSVYFILQVILRFRAKHGRAPDSLQRTSDEKELNCLKQEVMSDLNISQDLI 222


>SB_5276| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=1.1)
          Length = 886

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 212 NNESLMKLAGSDNSRTISSRIFSSKLMSSFLRAGSGFLLYSSLKRNRSF 66
           NNE++  ++G  N    +  I  +   +S  R  SG++  SSL+R RSF
Sbjct: 765 NNENITVISGDSNKN--ARNILDTSAFTS-ARDASGYVALSSLRRLRSF 810


>SB_4127| Best HMM Match : TFIIF_beta (HMM E-Value=4.4)
          Length = 333

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 209 NESLMKLAGSDNSRTISSRIFSSKLMSSFLRAGSGFLLYSSL 84
           N  ++K  G D++R  S+R  +S  MSS L +G     Y SL
Sbjct: 57  NRQVLKNGGDDSARPNSNRNVNSTFMSSRLHSGMWADSYGSL 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,895,725
Number of Sequences: 59808
Number of extensions: 369433
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)