Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00077
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.065
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)           33   0.26 
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)                      33   0.26 
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_52987| Best HMM Match : RBM1CTR (HMM E-Value=7)                     32   0.46 
SB_11707| Best HMM Match : rve (HMM E-Value=0.00025)                   32   0.46 
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.46 
SB_1289| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)              32   0.46 
SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_48400| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69)                   32   0.46 
SB_37010| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59)             32   0.46 
SB_14783| Best HMM Match : rve (HMM E-Value=0.00014)                   32   0.46 
SB_9972| Best HMM Match : rve (HMM E-Value=0.16)                       32   0.46 
SB_28574| Best HMM Match : KE2 (HMM E-Value=1.2)                       32   0.61 
SB_23695| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.61 
SB_4858| Best HMM Match : RnaseH (HMM E-Value=1.1)                     31   0.80 
SB_59606| Best HMM Match : rve (HMM E-Value=0.00032)                   31   0.80 
SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)                      31   1.1  
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)                      30   2.5  
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_54946| Best HMM Match : EGF (HMM E-Value=0.02)                      28   7.5  

>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 640 PWVVALLDALNESYAGVGVLIHPQVVMTGAHIAYKYAPGNLE 765
           PW   L       + G G L+HPQ V+T AH  Y+  P + +
Sbjct: 152 PWQAMLRSNYGGQFCG-GTLVHPQWVITAAHCVYRRGPNDFK 192


>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
          Length = 506

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 640 PWVVALLDALNESYAGVGVLIHPQVVMTGAHIAYKYAPGNLE 765
           PW   L  A    + G G LIHP+ V+T AH      P ++E
Sbjct: 272 PWQAMLRSAGGSQFCG-GSLIHPEWVLTAAHCLENTQPSDIE 312


>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 530

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 640 PWVVALLDALNESYAGVGVLIHPQVVMTGAHIAYKYAPGNLE 765
           PW   L  A    + G G LIHP+ V+T AH      P ++E
Sbjct: 232 PWQAMLRSAGGSQFCG-GSLIHPEWVLTAAHCLENTQPSDIE 272


>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1505

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 698  RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
            +TPT AYD   ++    T  T+R  PP PP
Sbjct: 1408 KTPTAAYDCDSSADEDDTPATKRLPPPAPP 1437


>SB_52987| Best HMM Match : RBM1CTR (HMM E-Value=7)
          Length = 247

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 698 RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
           +TPT AYD   ++    T  T+R  PP PP
Sbjct: 150 KTPTAAYDCDSSADEDDTPATKRLPPPAPP 179


>SB_11707| Best HMM Match : rve (HMM E-Value=0.00025)
          Length = 353

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 698 RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
           +TPT AYD   ++    T  T+R  PP PP
Sbjct: 306 KTPTAAYDCDSSADEDDTPATKRLPPPAPP 335


>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1586

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 698  RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
            +TPT AYD   ++    T  T+R  PP PP
Sbjct: 1489 KTPTAAYDCDSSADEDDTPATKRLPPPAPP 1518


>SB_1289| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)
          Length = 405

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 698 RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
           +TPT AYD   ++    T  T+R  PP PP
Sbjct: 308 KTPTAAYDCDSSADEDDTPATKRLPPPAPP 337


>SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 698  RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
            +TPT AYD   ++    T  T+R  PP PP
Sbjct: 1138 KTPTAAYDCDSSADEDDTPATKRLPPPAPP 1167


>SB_48400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 698 RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
           +TPT AYD   ++    T  T+R  PP PP
Sbjct: 65  KTPTAAYDCDSSADEDDTPATKRLPPPAPP 94


>SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69)
          Length = 756

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 698 RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
           +TPT AYD   ++    T  T+R  PP PP
Sbjct: 659 KTPTAAYDCDSSADEDDTPATKRLPPPAPP 688


>SB_37010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 651

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 698 RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
           +TPT AYD   ++    T  T+R  PP PP
Sbjct: 88  KTPTAAYDCDSSADEDDTPATKRLPPPAPP 117


>SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59)
          Length = 810

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 698 RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
           +TPT AYD   ++    T  T+R  PP PP
Sbjct: 713 KTPTAAYDCDSSADEDDTPATKRLPPPAPP 742


>SB_14783| Best HMM Match : rve (HMM E-Value=0.00014)
          Length = 496

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 698 RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
           +TPT AYD   ++    T  T+R  PP PP
Sbjct: 449 KTPTAAYDCDSSADEDDTPATKRLPPPAPP 478


>SB_9972| Best HMM Match : rve (HMM E-Value=0.16)
          Length = 514

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 698 RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
           +TPT AYD   ++    T  T+R  PP PP
Sbjct: 417 KTPTAAYDCDSSADEDDTPATKRLPPPAPP 446


>SB_28574| Best HMM Match : KE2 (HMM E-Value=1.2)
          Length = 210

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 470 KKT-AKRAWRSAALSHNGTRAKAAAGPLEVEGMRLQEPHGGRSDHHRRV 613
           KKT A+ A        N TRAKA    LE+E  RLQ+ H   S  H+ V
Sbjct: 79  KKTKAELASNKKEFLFNVTRAKAQHEELELEYNRLQQQHSRLSSEHQEV 127


>SB_23695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 698 RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
           +TPT AYD   ++    T  T+R  PP PP
Sbjct: 276 KTPTAAYDCDSSADEDDTPDTKRLPPPAPP 305


>SB_4858| Best HMM Match : RnaseH (HMM E-Value=1.1)
          Length = 512

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 698 RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
           +TPT AYD   ++    T  T R  PP PP
Sbjct: 415 KTPTAAYDCDSSADEDDTPATNRLPPPAPP 444


>SB_59606| Best HMM Match : rve (HMM E-Value=0.00032)
          Length = 404

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 698 RTPTPAYDSFKASSRATTQGTRRTEPPYPP 609
           +TPT AYD   ++    T  T R  PP PP
Sbjct: 307 KTPTAAYDCDSSADEDDTPATNRLPPPAPP 336


>SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 285

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 640 PWVVALLDALNESYAGVGVLIHPQVVMTGAHIAYKY 747
           PW +ALL    + Y G G L+H + V+TGAH    Y
Sbjct: 41  PWQIALLFK-RQQYCG-GALVHERWVVTGAHCFNPY 74


>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
          Length = 595

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
 Frame = -1

Query: 701 IRTPTPAYD-SFKASSRATTQGTRRTE---PPYPPS---GDGHSDP 585
           IR P+PA   S  +SS ++T G+RRT    PP  PS   G  HSDP
Sbjct: 311 IRVPSPAPSLSPLSSSGSSTPGSRRTPIHLPPTSPSFTPGRVHSDP 356


>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 620 PYPPSGDGHSDPHGVPVAA 564
           P PP GDG S   GVP+AA
Sbjct: 359 PLPPIGDGESGTSGVPLAA 377


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +3

Query: 507 YPITEPVPKPQ--PDPSKLKGCGY 572
           +P+T P+PKPQ  P PSK  G G+
Sbjct: 216 HPLTRPIPKPQRPPQPSK-SGSGW 238


>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 701 IRTP-TPAYDSFKASSRATTQGTRRT 627
           IRTP TP   S +ASSR + +GTR T
Sbjct: 221 IRTPSTPTTTSSRASSRESARGTRTT 246


>SB_54946| Best HMM Match : EGF (HMM E-Value=0.02)
          Length = 206

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 778 SPALAPNCPGRTCKRC 731
           S A  P+C GRTC+RC
Sbjct: 32  SCACTPSCSGRTCERC 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,735,330
Number of Sequences: 59808
Number of extensions: 575249
Number of successful extensions: 2052
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2049
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)