Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00071
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) 31 0.70
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 30 2.1
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 29 2.8
SB_12562| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 29 4.9
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8) 29 4.9
SB_14513| Best HMM Match : rve (HMM E-Value=0.14) 28 6.5
SB_38138| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
Length = 1249
Score = 31.5 bits (68), Expect = 0.70
Identities = 21/86 (24%), Positives = 40/86 (46%)
Frame = +2
Query: 260 TM*TNSLRSSVRATARESKYPTGFPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQT 439
T ++S ++S+ + + PS +++ + TS ++A L PS + S LQT
Sbjct: 725 TQESSSFQTSIYPSQSSIFRTSVLPSSYFSSTVILETSSSSASSLAPSPTATTTS-TLQT 783
Query: 440 SPGLSTPPKDSSLPTDILKILTTSKS 517
+ STP +L + ++ T S
Sbjct: 784 TEPSSTPSTSPALTVTMTTVIATDSS 809
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Frame = +2
Query: 272 NSLRSSVRATARESKYPT--GFPSCLWTTATLP---VTSETAALKLLPSARGRSVSGALQ 436
+SL + +++ S +PT PS T+++LP +TS ++ L S+ S+S L
Sbjct: 452 SSLSDFLTSSSSLSVFPTPSSLPSDFLTSSSLPSDFLTSSSSLSDFLTSSS--SLSDFLT 509
Query: 437 TSPGLSTPPKDSSLPTDIL 493
+S LS SSLP+D L
Sbjct: 510 SSSSLSVFYTSSSLPSDFL 528
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +2
Query: 311 SKYPTGFPSCLWTTATLP---VTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLP 481
S + T PS T+++LP +TS ++ L S+ S+S L +S LS SSLP
Sbjct: 712 SDFLTSLPSDFLTSSSLPSDFLTSSSSLSDFLTSSS--SLSDFLTSSSSLSVFYTSSSLP 769
Query: 482 TDIL 493
+D L
Sbjct: 770 SDFL 773
Score = 27.9 bits (59), Expect = 8.6
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Frame = +2
Query: 269 TNSLRSSVRATARESKYPTG--FPSCLWTTATLPVTSETAALKL--------LPS---AR 409
++SL + +++ S +PT PS T+++LP T++ L LPS
Sbjct: 846 SSSLSDFLTSSSSLSVFPTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTS 905
Query: 410 GRSVSGALQTSPGLSTPPKDSSLPTDIL 493
S+S L +S LS P SSLP+D +
Sbjct: 906 SSSLSDFLTSSSSLSVFPTSSSLPSDFV 933
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 137 PYFGMYHLVKIPIGRGLVHHVDYWGEGKVTKLDRVRGFRRATM*TNSLRSSVRAT 301
P + +++ + IG+GL + + K T LDRV+GF AT S ++S R T
Sbjct: 316 PLTTIINILSVTIGKGLPLTMYSIKDAK-TALDRVQGFLVATYAVKSPKTSARVT 369
>SB_12562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 534 KRAYTMEPGTNCPQT*RPRRNSAQNGLCRRKVNQRSLVQL 653
K Y + G C + PRR+ Q GLC ++ R + Q+
Sbjct: 18 KECYPFDYGVECDRIQIPRRDGIQTGLCDERLFIRLVRQM 57
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 347 TTATLPVTSETAALKLLPSARGRSVSGALQTSPGLST 457
T+ P +++ +A+ S RG+ V+GA+QTS LST
Sbjct: 874 TSVAAPTSAQYSAVTS-SSPRGQGVAGAIQTSTPLST 909
>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
Length = 149
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 332 PSCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDI 490
P W T +T+E A K + G S G S PPK +LP +I
Sbjct: 9 PRKFWPQKTSRLTTEILATKNIVPCHGNSGPQKYAPYHGNSGPPKHRALPPEI 61
>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
Length = 1101
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 57 RQRKNGKPPLSQTTTQMRTCC 119
++RK P LSQ+ TQ+ +CC
Sbjct: 787 KRRKTPAPALSQSATQLASCC 807
>SB_38138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 568
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 256 STKASYPVKFSHFSFSPV-IDVVYQPSTNRYLHEVVHTEVGYWGVWIQ 116
S + +Y ++F V I VYQ + +Y ++ V + YW V IQ
Sbjct: 372 SIQYAYQTVSIQYAFQTVSIQYVYQTVSIQYAYQTVSIQYAYWTVSIQ 419
>SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1209
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -2
Query: 504 VRIFRISVGNDESFGGVDNP--GDVCSAP 424
+R F + +G D + GGV NP GDV + P
Sbjct: 142 LRSFELRIGEDGTRGGVSNPKCGDVYAIP 170
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,183,651
Number of Sequences: 59808
Number of extensions: 521342
Number of successful extensions: 1684
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1680
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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