Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00064
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_45485| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.00021)        29   3.2  
SB_37652| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_10898| Best HMM Match : Galactosyl_T (HMM E-Value=1.9e-22)          29   5.6  
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)                 28   9.9  
SB_8449| Best HMM Match : PAPA-1 (HMM E-Value=7.4)                     28   9.9  

>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 643  RDAFLKISKTDNYPTLAPERPEISLTTSIDNPPE 744
            R+  +KIS  DN+PT  P + E++L  SI +  E
Sbjct: 1518 RNETIKISLVDNHPTGQPSQNEVTLEPSIKDGKE 1551


>SB_45485| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.00021)
          Length = 510

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 312 CTGTPSEDIPWFAINIGSEELEAGRSDI 395
           CT T +E+ PW+ +++G E +  G+  I
Sbjct: 480 CTHTENENNPWWRVDLGREHIITGKVQI 507


>SB_37652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 590 RNCSSGLRQQPIVFQFHLLLFLS*IACYFERV*PVC 483
           +NC  G +  P ++  HLLLF+  +  +   V PVC
Sbjct: 219 KNCVIGFKGLPPLYSAHLLLFVKVMHYFNSAVNPVC 254


>SB_10898| Best HMM Match : Galactosyl_T (HMM E-Value=1.9e-22)
          Length = 301

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 571 RPLLQLRAQESESLYSSLDRVTGIRDAFLKISKTDNY 681
           RP L   A ESE LYS +D     R +F K++ T  Y
Sbjct: 39  RPYLDHFADESEELYSEVDFEDLTRFSFKKVNATTIY 75


>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
          Length = 936

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 249 ISDVNFTQTLSEPLTIGSHIICTGTPSEDIP-WFAINIGSEELEAGRSDISV 401
           + ++N T+   + +   SH++  G     I  W+A+N+ S  ++ G S  S+
Sbjct: 723 VPEINSTRASFQRMNALSHVMLVGGAFISIMGWYAVNVASTIIQTGSSLASI 774


>SB_8449| Best HMM Match : PAPA-1 (HMM E-Value=7.4)
          Length = 181

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +1

Query: 598 ESESLYSSLDRVTGIRDAFLKIS---KTDNYPTLAPERPEISLTTSIDNPPETEQPVWN 765
           E+  + SS DR   ++D          TDN P     RP   LT  + +  +TE+  +N
Sbjct: 12  ETRDVRSSTDRAREVQDRQQTERTEYNTDNRPNAQSTRPTTDLTRKVQDRQQTERTEYN 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,138,308
Number of Sequences: 59808
Number of extensions: 465150
Number of successful extensions: 1134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)