Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00061
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)                29   3.2  
SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)                29   3.2  
SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_37662| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_58882| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   9.6  

>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 2532

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = +1

Query: 448  FRKFCLAEIRCKMGW-RYCNIKLDELNLWKIDGKA----LLQKFIPMESNGRVLHKCTCV 612
            +RK   A ++    W  +   +LD+ N W  DG+     L    IP ES    L + TC 
Sbjct: 2347 WRKLAPATLKSLGNWMEHFQKRLDQYNKWVNDGEPAVIWLSGLHIP-ESYLTALVQATCR 2405

Query: 613  YSGWNVDNRDNYYPITE 663
              GW +D    Y  +T+
Sbjct: 2406 KHGWPLDRSTLYTTVTK 2422


>SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 670

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = +1

Query: 448 FRKFCLAEIRCKMGW-RYCNIKLDELNLWKIDGKA----LLQKFIPMESNGRVLHKCTCV 612
           +RK   A ++    W  +   +LD+ N W  DG+     L    IP ES    L + TC 
Sbjct: 307 WRKLAPATLKSLGNWMEHFQKRLDQYNKWVNDGEPAVIWLSGLHIP-ESYLTALVQATCR 365

Query: 613 YSGWNVDNRDNYYPITE 663
             GW +D    Y  +T+
Sbjct: 366 KHGWPLDRSTLYTTVTK 382


>SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 527 KFSSSSLILQYLHPILHLISARQNFLNGNALVH-LSIDLNQICFHRI 390
           +FS  SL+  YL   LH+  A Q+ +N  A+   + I   + C H++
Sbjct: 632 RFSCMSLVDDYLGNALHVFKAHQSGVNDIAIREGMCISNGRDCIHKV 678


>SB_37662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 493 RYCNIKLDELNLWKIDGKALLQKFI-PMESNGRVL 594
           +Y N ++D   +W + GK  L +F+  M SN ++L
Sbjct: 109 QYINERIDRFRVWTMKGKQKLHEFLADMGSNSKLL 143


>SB_58882| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1027

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 721 LSLMLHIFPWSLCVDCDPVFRLWGNNCHGCQHSTQNTH 608
           LS+ ++     +C  CDP FR  G++C       +NTH
Sbjct: 589 LSVCVNSIGGFVCT-CDPGFRYNGSDCWDIDECVENTH 625


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,224,123
Number of Sequences: 59808
Number of extensions: 451625
Number of successful extensions: 1163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)