Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00057
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                 76   2e-14
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     30   0.75 
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)                      29   1.3  
SB_3784| Best HMM Match : ICAM_N (HMM E-Value=4.1)                     28   3.0  
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)                 28   3.0  
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_11452| Best HMM Match : PP-binding (HMM E-Value=7.9)                27   5.3  
SB_39953| Best HMM Match : Ank (HMM E-Value=1.8e-19)                   27   7.0  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_11195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_3480| Best HMM Match : Cytochrom_NNT (HMM E-Value=4)                27   7.0  
SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         27   9.2  
SB_51608| Best HMM Match : Lipase_GDSL (HMM E-Value=0.016)             27   9.2  
SB_7875| Best HMM Match : Lipase_GDSL (HMM E-Value=0.016)              27   9.2  
SB_4093| Best HMM Match : Lipase_GDSL (HMM E-Value=0.00026)            27   9.2  
SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  
SB_47738| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_16143| Best HMM Match : Lipase_GDSL (HMM E-Value=0.00077)           27   9.2  
SB_2599| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 36/55 (65%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
 Frame = +2

Query: 89  QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV-RTETVRRGPVGRPDAP 250
           +F W+H+YW LTNEGI YLR FLHLP EIVPATL+R V R ET R  P G  D P
Sbjct: 59  KFCWKHYYWNLTNEGITYLRDFLHLPTEIVPATLRRQVTRAETARPRPKGM-DGP 112



 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 47/131 (35%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
 Frame = +1

Query: 1   PKHTELEKIPNLQVIKAMQSLKSRGYVKDTVCLEALLLVPNQ*GY*ILENIL-APSS*NC 177
           PKHT++E +PNL VIKA+QSLKSRGYV++  C +         G   L + L  P+    
Sbjct: 30  PKHTQIENVPNLHVIKALQSLKSRGYVEEKFCWKHYYWNLTNEGITYLRDFLHLPTEIVP 89

Query: 178 AC---NT*ALSTYRDSTXXXXXXXXXXXXXAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 348
           A          T R                  DR +YRR P  PGV   + K   G G  
Sbjct: 90  ATLRRQVTRAETARPRPKGMDGPRGPGEGGDRDRESYRRGP-PPGV---EGKGGAGSGFK 145

Query: 349 DLEFKGGYGRG 381
             EF+ G+GRG
Sbjct: 146 P-EFRQGFGRG 155


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 283 RTPAAPGVAPHDK-KADVGPGS 345
           +TPA PG+AP D  K  VGPG+
Sbjct: 365 KTPALPGIAPSDALKGTVGPGN 386


>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
          Length = 585

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 292 AAPGVAPHDKKADVGP 339
           A PG+APHDKK+  GP
Sbjct: 545 ARPGLAPHDKKSGKGP 560


>SB_3784| Best HMM Match : ICAM_N (HMM E-Value=4.1)
          Length = 142

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 200 VRTETVRRGPVGRPDAPAPLL 262
           + T  +  GPVG+PDAPA L+
Sbjct: 28  IDTVDLEGGPVGKPDAPAALM 48


>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
          Length = 769

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 309 CNTRGSRSTSVCRSVLSRGAGASGRPT--GPRRTVSVRTE 196
           C+TRGSR TS   S       A  RPT   PR++ +   E
Sbjct: 673 CSTRGSRDTSRDTSCKDTTGSAGTRPTRQSPRKSAAKNNE 712


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 309  CNTRGSRSTSVCRSVLSRGAGASGRPT--GPRRTVSVRTE 196
            C+TRGSR TS   S       A  RPT   PR++ +   E
Sbjct: 1340 CSTRGSRDTSRDTSCKDTTGSAGTRPTRQSPRKSAAKNNE 1379


>SB_11452| Best HMM Match : PP-binding (HMM E-Value=7.9)
          Length = 221

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 240 LMPQPLC*GQICIQTYSCCPWC 305
           L P+P C G++ I T    PWC
Sbjct: 11  LAPKPRCKGRVPIPTKRSVPWC 32


>SB_39953| Best HMM Match : Ank (HMM E-Value=1.8e-19)
          Length = 216

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 125 NEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPAPLL 262
           N+     R+ +++P +     +K  + T  +  GPVG+P  PA L+
Sbjct: 128 NKSFSLARLIINIPNDGFTVYIKL-IDTVDLEGGPVGKPVVPAALM 172


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 352  DQLSLDQHQPFYHEVQHQGQQEYVCMQICPQ 260
            D+   D H+ + HE + QG  E +C   CP+
Sbjct: 978  DESEEDGHEDYCHECE-QGGDELICCDGCPR 1007


>SB_11195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 119 LTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPAPLL 262
           L +E    + + LH P    P  +K  + T  +  GPVG+P  PA L+
Sbjct: 508 LIHEEFRKVCVLLHSPS--TPTNIKL-IDTVDLEGGPVGKPVVPAALM 552


>SB_3480| Best HMM Match : Cytochrom_NNT (HMM E-Value=4)
          Length = 245

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 303 TRGSRSTSVCRSVLSRGAGASG--RPTGPRRTVSVR 202
           T  S++ + CR   +RGAGASG  RP   +   +V+
Sbjct: 86  TTRSKAATRCRRFAARGAGASGAARPVQNKMAATVK 121


>SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 292 AAPGVAPHDKKADVGP 339
           A  G+APHDKKA  GP
Sbjct: 377 ARHGLAPHDKKAGRGP 392


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/49 (22%), Positives = 21/49 (42%)
 Frame = -1

Query: 319  YHEVQHQGQQEYVCMQICPQQRGWGIRTTNRATAYCLCTY*ALKCCRHN 173
            Y+  +   + +Y  ++ C  + GW + T       C   Y  L+C + N
Sbjct: 873  YYGAECDRRMDYCKLKPCVVENGWCVNTQQGFRCVCKRGYGGLRCHKKN 921


>SB_51608| Best HMM Match : Lipase_GDSL (HMM E-Value=0.016)
          Length = 290

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 167 EEGARIFSSIQYPHWLGTSKSASRQTVSLT*P 72
           EEG  +F  I+Y H L    + + +TV+LT P
Sbjct: 249 EEGKPLFERIKYLHELFLKHNKNTKTVALTLP 280


>SB_7875| Best HMM Match : Lipase_GDSL (HMM E-Value=0.016)
          Length = 132

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 167 EEGARIFSSIQYPHWLGTSKSASRQTVSLT*P 72
           EEG  +F  I+Y H L    + + +TV+LT P
Sbjct: 91  EEGKPLFERIKYLHELFLKHNKNTKTVALTLP 122


>SB_4093| Best HMM Match : Lipase_GDSL (HMM E-Value=0.00026)
          Length = 220

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 167 EEGARIFSSIQYPHWLGTSKSASRQTVSLT*P 72
           EEG  +F  I+Y H L    + + +TV+LT P
Sbjct: 138 EEGKPLFERIKYLHELFLKHNKNTKTVALTLP 169


>SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 167 EEGARIFSSIQYPHWLGTSKSASRQTVSLT*P 72
           EEG  +F  I+Y H L    + + +TV+LT P
Sbjct: 421 EEGKPLFGRIKYLHELFLKHNKNTKTVALTLP 452


>SB_47738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 140 YLRIFLHLPPEIVPATLK-RSVRTETVRRGPVGRPDAPAPLL 262
           Y+R  LH   E   + LK + + T  +  GPVG+P  PA L+
Sbjct: 2   YIRPSLHNRYERFISLLKIKLIDTVDLEGGPVGKPVVPAALM 43


>SB_16143| Best HMM Match : Lipase_GDSL (HMM E-Value=0.00077)
          Length = 170

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 167 EEGARIFSSIQYPHWLGTSKSASRQTVSLT*P 72
           EEG  +F  I+Y H L    + + +TV+LT P
Sbjct: 91  EEGKPLFERIKYLHELFLKHNKNTKTVALTLP 122


>SB_2599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 152 FLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPAPLL 262
           +  LP  I   ++ + + T  +  GPVG+P  PA L+
Sbjct: 11  YSRLPATICMKSVIKLIDTVDLEGGPVGKPVVPAALM 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,090,580
Number of Sequences: 59808
Number of extensions: 228951
Number of successful extensions: 833
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)