Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00055
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               128   3e-30
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 31   1.2  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   6.2  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)                   28   6.2  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   28   6.2  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       28   6.2  
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)               28   8.3  
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_21126| Best HMM Match : 7tm_1 (HMM E-Value=0.0015)                  28   8.3  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           28   8.3  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  128 bits (310), Expect = 3e-30
 Identities = 69/150 (46%), Positives = 80/150 (53%)
 Frame = +3

Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
           G   AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH               
Sbjct: 65  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSA 124

Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEKSRRSTRPNRLSSS*GASRHGLISLRCTSLS 602
                      ARGH IEKI E+PLV+++     T+ +       A        +C    
Sbjct: 125 LAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSK 184

Query: 603 VFVLVRVKCATVRRIQRKGPLIIFNKDQGL 692
                + K    R + RKGPLII+N DQGL
Sbjct: 185 KIRAGKGKMRNRRTVMRKGPLIIYNNDQGL 214



 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 44/69 (63%), Positives = 54/69 (78%)
 Frame = +1

Query: 49  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 228
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 229 SAESWGTGR 255
           SAESWGTGR
Sbjct: 60  SAESWGTGR 68


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 336 HHDTCYRRHPDRTYEYHHHGHAEFGRQPSSTP*FSTGLV 220
           HH   + RH  R + YHHH +      P +   F T ++
Sbjct: 570 HHHLHHHRHHHRHHHYHHHHYPHHHHHPCTIIIFVTTII 608


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 345 TYVHHDTCYRRHPDRTYEYHHHGHA 271
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 336 HHDTCYRRHPDRTYEYHHH 280
           HH   YR H  + Y +HHH
Sbjct: 96  HHHQHYRHHRHQHYRHHHH 114


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 116  GRGLAAPCTVSLFSEYTDTKGRATDRLI 33
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
          Length = 304

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -1

Query: 342 YVHHDTCYRRHPDRTYEYHHHGHAEFGRQPSSTP*FSTGLVTSLL 208
           Y HH   +  H    + +HHH H        +T    T ++T+++
Sbjct: 158 YYHHHLLHHHHHHWHHHHHHHRHHHHSFTTIATTTVITTIITTVI 202


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 336 HHDTCYRRHPDRTYEYHHHGHAEFGRQ 256
           HH     RH  R + +HHH H E+ R+
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRR 350


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 342 YVHHDTCYRRHPDRTYEYHHHGH 274
           Y HH   +RR   R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255


>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
          Length = 358

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 315 RHPDRTYEYHHHGHAEFGRQPSSTP 241
           RH    Y +HHH H  F + P   P
Sbjct: 133 RHYHHHYHHHHHHHHHFVQPPYQVP 157


>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 300 TYEYHHHGHAEFGRQPSSTP*FS-TGLVTSLLAHAVGLP-RVLGHRNVN 160
           +Y++HHHG  E   QP +T   + T +   L +H    P RV+G   ++
Sbjct: 21  SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69


>SB_21126| Best HMM Match : 7tm_1 (HMM E-Value=0.0015)
          Length = 195

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 462 GHIIEKIPELPLVVAEKSRRSTRPNRLSSS*GASRHG 572
           G +  K P LP   + KSR++ R   LSS    SR G
Sbjct: 152 GLVCSKAPSLPRTSSSKSRKTGRKATLSSRLFGSRRG 188


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 336 HHDTCYRRHPDRTYEYHHHGH 274
           HH   + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,086,738
Number of Sequences: 59808
Number of extensions: 430563
Number of successful extensions: 1370
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)