Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00052
         (404 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)                  31   0.36 
SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.62 
SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.8  
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 27   7.7  
SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)
          Length = 835

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 281 PPHKAVPYRPRSRPASG--PAGTPYSQ*GTAVGRPPSPGINTRCVSSHWNHSIPRS 120
           PP KAVP R    P S   P+    S+     G+PP P  + R  S    H +P S
Sbjct: 552 PPKKAVPSRGHQTPKSNITPSSISTSEEHKIAGKPPRPKSSKRRTSKPTTH-LPSS 606


>SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = -3

Query: 282 SPTQGGPVPA-TFASSF--RPCRYSLFSMRNSCWSPTFTGYKYQVCLFSLESFDPQVFLS 112
           S T   P+P  T  +S   RPC  S+ S     +  + T  +  +CL S+ S DPQ+ L+
Sbjct: 36  SITSTDPLPCLTIITSTDPRPCLTSMTSTHPQPYLTSITTTEPPLCLTSITSTDPQLCLT 95

Query: 111 PYLST 97
              ST
Sbjct: 96  SITST 100


>SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 216  LFSMRNSCWSPTFTGYKYQVCLFSLESFDPQVFLSPYLSTFTSSFKY 76
            L + R++ W+      +Y V  + +E F P+  + P LS   S  KY
Sbjct: 1082 LVTSRHNNWTREQVPARYSVLTYKVERFSPRNEMRPSLSRDYSILKY 1128


>SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 191 GRPPSPGINTRCVSSHWNHSIPRSSCR 111
           GRPPS   +    SS+W+ S+ R+  R
Sbjct: 205 GRPPSVSSDLSVASSYWDPSLTRTRSR 231


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 47   FKILNTEHEMYLKLDVNVDRYGDRKTWGS--NDSSEKRHTWYLYPVKVGDQQLFLIEN 214
            F I +T+ ++ L   V    +   + W S   + S K++    +P+KVGD  +FL  N
Sbjct: 1072 FTITSTKAQVTLSCAVEHPFFVYGQGWSSCVPEQSLKKYNLQCHPLKVGDVCIFLTPN 1129


>SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 19/46 (41%), Positives = 20/46 (43%)
 Frame = -1

Query: 308 GVVGDCPVIPPHKAVPYRPRSRPASGPAGTPYSQ*GTAVGRPPSPG 171
           GV GD    PP  A P  P  R   GP G P     T +G P  PG
Sbjct: 471 GVRGDRG--PPGPAGPPGPSGRYVPGPPGPPGR---TVIGLPGPPG 511


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,383
Number of Sequences: 59808
Number of extensions: 318783
Number of successful extensions: 1151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)