Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00051X
         (336 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   30   0.54 
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   2.2  
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               27   2.9  
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  27   3.8  
SB_40218| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_44805| Best HMM Match : Col_cuticle_N (HMM E-Value=2.7)             26   6.6  
SB_47009| Best HMM Match : WSC (HMM E-Value=0.16)                      26   8.7  
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_19573| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 124 CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRE 243
           C  ++H G+++ I   + R Q+ G+  R    C TS+ +E
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 136 WHWGSVDSISGSRARFQLSGNSGRKHSR 219
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 136 WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILR 240
           + W  VDSI+ S+A+F  S  +   H    T  LR
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLR 299


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 176 AREPL-MESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAI 51
           +REP    S  PQ H+L  +R  L + ++   CS   CS+  I
Sbjct: 57  SREPFDSRSKLPQKHLLNSKRRALAIAKILLACSPEHCSMSFI 99


>SB_40218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 151 VDSISGSRARFQLSGNSGRKHSRCCTSILREIKWPQHC 264
           V+ I+ SR R    GN+ +        I R I WP  C
Sbjct: 24  VEIITSSRRR---KGNNAKSRKNAADKIRRSIGWPSTC 58


>SB_44805| Best HMM Match : Col_cuticle_N (HMM E-Value=2.7)
          Length = 251

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 151 VDSISGSRARFQLSGNSGRKHSRCCTSILREIKWPQHC 264
           V+ I+ SR R    GN+ +        I R I WP  C
Sbjct: 215 VEIITSSRRR---KGNNAKSRKNAADKIRRSIGWPSTC 249


>SB_47009| Best HMM Match : WSC (HMM E-Value=0.16)
          Length = 852

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 200 LFPLS*NRAREPLMESTDPQCHILQH---RRPRLPLMQLEAPC 81
           L  +S N      ME  + Q  ++ H   R PRLP+  +  PC
Sbjct: 580 LIRISYNNPAHTKMEERNDQNPVILHQFPRNPRLPVPNISPPC 622


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 241 PVVCLCSSGCASCRYSR 191
           P+ C CSS C   +YS+
Sbjct: 83  PITCSCSSNCCRKKYSK 99


>SB_19573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 127 CNIWHWGSVDSISGSRARF 183
           C + HWGSV + +  RAR+
Sbjct: 35  CQVPHWGSVRTFNVCRARY 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,841,496
Number of Sequences: 59808
Number of extensions: 184292
Number of successful extensions: 391
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)