Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00048
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             147   4e-36

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  147 bits (356), Expect = 4e-36
 Identities = 68/98 (69%), Positives = 80/98 (81%)
 Frame = +3

Query: 21  MTRKXRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVDSAAVRDINDASVYP 200
           MT+K  NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIV++AAVRDI DASVY 
Sbjct: 1   MTKKRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYE 60

Query: 201 MFQLPKLYAKLHYCVSCASTAKLSGTDRRKTEESVLLP 314
           ++ LPKLY KLHYCVSCA  +K+   +R K +  +  P
Sbjct: 61  VYALPKLYVKLHYCVSCAIHSKVV-RNRSKEDRKIRTP 97



 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 17/20 (85%), Positives = 20/20 (100%)
 Frame = +2

Query: 254 LHSKVVRNRSKKDRRIRTPP 313
           +HSKVVRNRSK+DR+IRTPP
Sbjct: 79  IHSKVVRNRSKEDRKIRTPP 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,189,598
Number of Sequences: 59808
Number of extensions: 202395
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)