Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00047
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43840| Best HMM Match : NDK (HMM E-Value=0) 122 2e-28
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1) 30 1.4
SB_43132| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
Length = 786
Score = 122 bits (294), Expect = 2e-28
Identities = 57/87 (65%), Positives = 65/87 (74%)
Frame = +2
Query: 248 QRLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQV 427
+ LA F+ GL KYMS PV MVWEGL VVKT R MLG T+PA S PGTIRGD I +
Sbjct: 687 ESLAKLKFYDGLCKYMSQTPVCAMVWEGLGVVKTARVMLGETDPAKSLPGTIRGDFSIHI 746
Query: 428 GRNIIHGSDSVESAKKEIGLWFTDKEV 508
GRNIIHGSD+VE+AK+EI LWF D E+
Sbjct: 747 GRNIIHGSDAVETAKEEIALWFKDDEL 773
Score = 83.4 bits (197), Expect = 1e-16
Identities = 42/60 (70%), Positives = 49/60 (81%), Gaps = 5/60 (8%)
Frame = +3
Query: 105 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSD-----WHPGL 269
ERTFIMVKPDGVQRGLVG II+RFE+KGFKLV LK V SEE L++HY+D ++PGL
Sbjct: 127 ERTFIMVKPDGVQRGLVGEIIKRFEQKGFKLVALKMVQESEEHLKKHYADLAHLPFYPGL 186
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/48 (66%), Positives = 39/48 (81%)
Frame = +3
Query: 105 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHY 248
ERTF+M+KPD V RGL+G II RFEKKGFKLV +KFV SE+ ++HY
Sbjct: 639 ERTFLMIKPDAVSRGLIGEIISRFEKKGFKLVAMKFVKKSEDHFRKHY 686
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/59 (49%), Positives = 34/59 (57%)
Frame = +2
Query: 254 LASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVG 430
LA PF+PGLVK+MSSGPVV M ADS+PGTIRGD C+ +G
Sbjct: 177 LAHLPFYPGLVKFMSSGPVVAM--------------------ADSKPGTIRGDFCVHIG 215
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 52.4 bits (120), Expect = 3e-07
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Frame = +2
Query: 179 KERLQTSRFEIRMAIRRTSPATL-----QRLASRPFFPGLVKYMSSGPVVPMVWEGLNVV 343
K+R++ + F+I++ T L + FF GL YMSSGP + MV + V
Sbjct: 692 KQRIKEAGFKIQLQKEVTLSKELASQFYHEHEGKDFFEGLTDYMSSGPTMFMVLSKEDAV 751
Query: 344 KTGRQMLGATNPADSQ---PGTIRGDLCIQVGRNIIHGSDSVESAKKEIGLWFTDKEV 508
R ++G +P ++ P +IR L V +N++HG E A K I +F + ++
Sbjct: 752 SGWRSLMGPVDPEQAKEMAPESIRAALGKDVMKNVVHGPSDPEKAGKVIKEFFPEAKI 809
Score = 44.4 bits (100), Expect = 8e-05
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Frame = +2
Query: 185 RLQTSRFEIRMA-----IRRTSPATLQRLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKT 349
++Q + FEI M+ R + + FF LV MSSGP++ + + ++
Sbjct: 559 KIQEAGFEIAMSKEMHLTREQAEEFYSEHKDQEFFDTLVTNMSSGPMMALCLAREDAIEG 618
Query: 350 GRQMLG---ATNPADSQPGTIRGDLCIQVGR-NIIHGSDSVESAKKEIGLWF 493
R MLG D P ++R ++ N +HGSD+ E+A+KEI +F
Sbjct: 619 WRGMLGPKEVEKAKDEAPESLRAQFQVEDSPINPLHGSDTAENAEKEIQKFF 670
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 434 NIIHGSDSVESAKKEIGLWFTD 499
N +HG DS ESA +E+ +F D
Sbjct: 501 NAVHGCDSNESAARELAFFFPD 522
>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1373
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 354 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 262
R VF T+ HT+ T G E +YF RP K+ R
Sbjct: 194 RAVFNTMVVLHTVLTKGEETLYFERPIKRPR 224
>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
Length = 908
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 354 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 262
R VF T+ HT+ T G + +YF RP ++ R
Sbjct: 759 RAVFNTMVVLHTVLTKGEQTLYFERPIRRPR 789
>SB_43132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 354 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 262
R VF T+ HT+ T G + +YF RP ++ R
Sbjct: 46 RAVFNTMVVLHTVLTKGEQTLYFERPIRRPR 76
>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -1
Query: 149 TTLYTIRLNHNKST---LTLFRHHEILLTCSINYTCTTA 42
TT YT+ ++ +T T H TC+ +YTCTT+
Sbjct: 149 TTSYTLTTSYTCTTSYTCTTSYTHTTSYTCTTSYTCTTS 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,998,875
Number of Sequences: 59808
Number of extensions: 416733
Number of successful extensions: 1051
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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