Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00040
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 38 0.012
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29) 37 0.016
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5) 37 0.021
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 36 0.047
SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 35 0.083
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38) 35 0.083
SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_58346| Best HMM Match : HIG_1_N (HMM E-Value=5.8) 33 0.19
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) 33 0.19
SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20) 33 0.33
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 33 0.33
SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_45878| Best HMM Match : Sec8_exocyst (HMM E-Value=2.7) 32 0.44
SB_34656| Best HMM Match : Ribosomal_L30_N (HMM E-Value=4) 32 0.44
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 32 0.44
SB_6955| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1) 32 0.44
SB_1448| Best HMM Match : Sec8_exocyst (HMM E-Value=2.7) 32 0.44
SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5) 32 0.44
SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4) 32 0.44
SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4) 32 0.44
SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13) 32 0.44
SB_16936| Best HMM Match : Borrelia_orfA (HMM E-Value=2.2) 32 0.44
SB_9961| Best HMM Match : Borrelia_orfA (HMM E-Value=2.3) 32 0.44
SB_25854| Best HMM Match : Vicilin_N (HMM E-Value=5.5) 32 0.58
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7) 32 0.58
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_21262| Best HMM Match : IL1_propep (HMM E-Value=9.4) 31 0.77
SB_57739| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.77
SB_2310| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6) 31 1.0
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 30 1.8
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_41521| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_29436| Best HMM Match : PAN (HMM E-Value=0.021) 30 2.4
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_47841| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 30 2.4
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 30 2.4
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 30 2.4
SB_59511| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7) 29 3.1
SB_57848| Best HMM Match : Ribosomal_L30_N (HMM E-Value=5.4) 29 3.1
SB_45371| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2) 29 3.1
SB_3893| Best HMM Match : PaREP8 (HMM E-Value=2.4) 29 4.1
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 29 4.1
SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_28641| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9) 29 5.5
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13) 29 5.5
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 28 7.2
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 28 7.2
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 28 9.5
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_36288| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 28 9.5
SB_28101| Best HMM Match : DiS_P_DiS (HMM E-Value=6.6) 28 9.5
SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95) 28 9.5
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = +1
Query: 127 PPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRT-RH-SSRHKREC*-RYTHRHKQNEK* 297
P E R + T H+++ ++ R R+ +T RH SSRHK R H+ ++E
Sbjct: 48 PHETSRHETSRHETSRHERSRHETRQHERSRHKTSRHESSRHKTSRHGRSRHKTSRHETS 107
Query: 298 RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPRA 402
RHER H T + ++ R ++ + +R R+
Sbjct: 108 RHERSRHETRQHERSRHKTSRHEKSRHETSRHERS 142
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 133 ENKRVRNHNNYTLSHKKTAYQGRP--VPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHE 306
E+ R + + H+ + ++ P R+ T +SRH+R H +Q+E+ RH+
Sbjct: 25 ESNRHKTSRHERSRHETSRHESSPHETSRHETSRHETSRHERS----RHETRQHERSRHK 80
Query: 307 --RHEHNTHK 330
RHE + HK
Sbjct: 81 TSRHESSRHK 90
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 133 ENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERH 312
E R + + T H+++ ++ R+ T SRH+ H +E RHE
Sbjct: 5 ETSRHKTKQHETSRHERSRHESN---RHKTSRHERSRHETS----RHESSPHETSRHETS 57
Query: 313 EHNTHK-EKQKRKVQTQARPQHR 378
H T + E+ + + + R +H+
Sbjct: 58 RHETSRHERSRHETRQHERSRHK 80
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 211 RNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
R+ T+ +SRH+R ++RHK + RHER H T + + ++ + +R
Sbjct: 8 RHKTKQHETSRHERSR-HESNRHKTS---RHERSRHETSRHESSPHETSRHETSRHETSR 63
Query: 391 GPRA 402
R+
Sbjct: 64 HERS 67
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 223 RTRH-SSRHKREC*-RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
R+RH S+RHK R H ++E HE H T + + R +++ + +R+R
Sbjct: 21 RSRHESNRHKTSRHERSRHETSRHESSPHETSRHETSRHETSRHERSRHETRQHERSR 78
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 37.9 bits (84), Expect = 0.009
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +1
Query: 166 TLSHKKTAYQGRPVPRNCTRT-RH-SSRHKREC*-RYTHRHKQNEK*RHERHEHNTHKEK 336
T H+++ ++ R R+ +T RH SSRHK R H+ ++E RHER H T + +
Sbjct: 21 TSRHERSRHETRQHERSRHKTSRHESSRHKTSRHERSRHKTSRHETSRHERSRHETRQHE 80
Query: 337 QKRKVQTQARPQHRQRTRGPRA 402
+ R ++ +++R R+
Sbjct: 81 RSRHKTSRHETSRHEKSRHERS 102
Score = 32.3 bits (70), Expect = 0.44
Identities = 24/98 (24%), Positives = 42/98 (42%)
Frame = +1
Query: 133 ENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERH 312
E R + + + HK + ++ R+ T +SRH+R H +Q+E+ RH+
Sbjct: 35 ERSRHKTSRHESSRHKTSRHERS---RHKTSRHETSRHERS----RHETRQHERSRHKTS 87
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLR 426
H T + ++ R R +H R LG+R
Sbjct: 88 RHETSRHEKSR----HERSRHETRQHETLVGMRQLGMR 121
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 37.5 bits (83), Expect = 0.012
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +1
Query: 136 NKRVRNHNNYTLSHK-KTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERH 312
NKR + N + H + A+ P+ R R R +R R R ++ K R R
Sbjct: 1430 NKRKKRQRNNIICHIIRLAHS----PQKVVRRRIVRRFRRRVVRRRIRRRRRRKRRRRRR 1485
Query: 313 EHNTHKEKQKRKVQTQARPQHRQR 384
+ +QKR+ + Q R QHR+R
Sbjct: 1486 RRRRRRRQQKRQRRKQRRYQHRRR 1509
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 211 RNCTRTRHSSRHKREC*RYTHRHKQN--EK*RHERHEHNTHKEKQKRKVQTQARPQHRQR 384
R R R R R R RHK+N ++ R R K ++R+ Q ++R HR++
Sbjct: 1183 RRKRRRRLIRRKTRRFARRVQRHKRNLQKRLRRARRRRRLRKRIRRRRRQRRSRRYHRRQ 1242
Query: 385 TRGPRAA 405
R R A
Sbjct: 1243 LRRLRRA 1249
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 223 RTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQR 384
R R R KR R R + + R R + + K++RKV+ AR + RQR
Sbjct: 680 RIRRQRRRKRRRKRRRQRRSRRRRRRRRRRRRSQLRRKRRRKVR--ARRRKRQR 731
>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
Length = 462
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/94 (23%), Positives = 39/94 (41%)
Frame = +1
Query: 115 LQIVPPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK 294
L+ PPE + RNH Q + P +H R + + R H+ K E+
Sbjct: 343 LEQKPPEEGKNRNHQKRARIKNTRRRQEQKTPEEGKNRKHQKRARTKNTRRRHQQKPPEE 402
Query: 295 *RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGP 396
++++H+ K R+ Q Q P+ + + P
Sbjct: 403 GKNKKHQKKA-TTKNTRRGQEQKPPEEGKNKKTP 435
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/85 (24%), Positives = 34/85 (40%)
Frame = +1
Query: 130 PENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHER 309
PE + R H + + Q + P H R + E T + +K R
Sbjct: 158 PEEGKNRKHQKKARTKTTRSRQEQKTPEEGKNKNHQKRARIE----TPEEGEKKKNSRRR 213
Query: 310 HEHNTHKEKQKRKVQTQARPQHRQR 384
E T +E + RK Q +AR ++ +R
Sbjct: 214 QEQKTPEEGKNRKHQKKARTKNTRR 238
>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
Length = 435
Score = 36.7 bits (81), Expect = 0.021
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +3
Query: 129 ARKQTSPKPQQLHVKSQENGISGSSSPTELHTDTAQQQAQTRMLKIHTPTQTEREIKTRT 308
+RK + + + +K++ G + +SS T+ T + K T + T+ +KT+T
Sbjct: 49 SRKTKTSRKTKTSLKTKTKGKTRTSSKTKTSHKTKTSRNTKTSRKTKTSSNTKTSLKTKT 108
Query: 309 ARAQHTQRKAKTK 347
+R T R KTK
Sbjct: 109 SRNTKTSRNTKTK 121
Score = 32.7 bits (71), Expect = 0.33
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +3
Query: 132 RKQTSPKPQQLHVKSQENGISGSSSPTELHTDTAQQQAQTRMLKIHTPTQTEREIKTRTA 311
R + + +P+Q + + G + +S T T+T+++ + K T+T R T+T+
Sbjct: 148 RPRQAARPRQAS-RPRPRGNTKTSRKTSHKTETSRKTKTSLKTKTSLKTKTSRN--TKTS 204
Query: 312 RAQHTQRKAKTK 347
R T RK KTK
Sbjct: 205 RKTKTSRKTKTK 216
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 35.5 bits (78), Expect = 0.047
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 229 RHSSRH-KREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
RH +H +R ++ R +Q + RH R H++K +R+ Q Q R + +Q+ R
Sbjct: 160 RHRQKHQRRNRQKHQRRQRQEHQRRHRRQHQRRHRQKHQRR-QHQRRERQKQQQR 213
Score = 33.1 bits (72), Expect = 0.25
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +1
Query: 274 RHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
+H++ + +H+R H+ +Q+++ Q + R QH++R R
Sbjct: 156 KHQRRHRQKHQRRNRQKHQRRQRQEHQRRHRRQHQRRHR 194
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 178 KKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RH-ERHEHNTHKEKQKRKVQ 354
KK + R + R +H R ++E + RH++ + RH ++H+ H+ ++++K Q
Sbjct: 155 KKHQRRHRQKHQRRNRQKHQRRQRQE---HQRRHRRQHQRRHRQKHQRRQHQRRERQKQQ 211
Query: 355 TQARPQ 372
+ + Q
Sbjct: 212 QRQKQQ 217
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 229 RHSSRHKREC*RYTHRHKQNEK*RHERHEHNT--HKEKQKRKVQTQARPQHRQRTR 390
+H RH++ ++ R++Q + R +R EH ++ Q+R Q R QH++R R
Sbjct: 156 KHQRRHRQ---KHQRRNRQKHQ-RRQRQEHQRRHRRQHQRRHRQKHQRRQHQRRER 207
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 35.5 bits (78), Expect = 0.047
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 142 RVRNHNNYTLSHKKTAYQGRPVPRNCTRTRH-SSRHKREC*RYTHRHKQNEK*RHERHEH 318
R R+H + S T + R R+ +R++ SR R + R + + + R +
Sbjct: 437 RSRSHTR-SRSRSHTRSRSRSRIRSRSRSQELDSRTLRSKKSFERRSRASHRESRSRSKS 495
Query: 319 NTHKEKQKRKVQTQARPQHRQRTRG 393
T +E+ ++K ++++RP+ R R+RG
Sbjct: 496 RTKRERSRKKSRSRSRPRSRSRSRG 520
>SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 583
Score = 34.7 bits (76), Expect = 0.083
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 268 THRHKQNEK*RHER--HEHNTHKEKQKRKVQTQARPQHRQRTRGPRA 402
+H+ + EK HE+ HE +HKE+ + K + RP H +R+ R+
Sbjct: 441 SHKERSQEKRSHEKRPHEERSHKERSQEKRSHEKRP-HEERSHEERS 486
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 184 TAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHK-QNEK*RHER-HEHNTHKEKQKRKVQT 357
T +GR V + +R + R +H + + E+ ER HE +HKE+ + K
Sbjct: 393 TFSKGRIVNKRSSRLVPRVKSMRITRGKSHEGRLEEERPEEERTHEERSHKERSQEKRSH 452
Query: 358 QARPQHRQRTRGPRA 402
+ RP H +R+ R+
Sbjct: 453 EKRP-HEERSHKERS 466
>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
Length = 641
Score = 34.7 bits (76), Expect = 0.083
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +1
Query: 112 LLQIVPPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNE 291
++ IV ++ + N + H+K Q + + +H H+++ ++ HRH++ +
Sbjct: 562 IINIVINQHHHQKQQNQHHRHHQKQQNQHHRHHQK-KQNQHYRHHQKQQNQHHHRHRKQQ 620
Query: 292 K*RHERHEHN 321
H RH HN
Sbjct: 621 NQHHHRHGHN 630
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 223 RTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHR 378
+ +H H+++ ++ HRH Q ++ +H RH + R + Q + HR
Sbjct: 576 QNQHHRHHQKQQNQH-HRHHQKKQNQHYRHHQKQQNQHHHRHRKQQNQHHHR 626
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 271 HRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQR 384
HRH Q ++ +H RH + + + Q + HR R
Sbjct: 580 HRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQHHHRHR 617
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +1
Query: 262 RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
++ H+ +QN+ RH + + N H ++K R +Q+ +
Sbjct: 569 QHHHQKQQNQHHRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQ 611
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 232 HSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQR 384
H + + + R+ H+ +QN+ RH + + N H + +K Q Q +HR++
Sbjct: 571 HHQKQQNQHHRH-HQKQQNQHHRHHQKKQNQH-YRHHQKQQNQHHHRHRKQ 619
>SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 190 YQGRPVPRNCTRTRHSSRHK-REC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQAR 366
++ R R R R R + R+ R R +Q ++ R + + H+++Q+++ + + R
Sbjct: 2 HKQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRHRQRQRQRQRQRQR 61
Query: 367 PQHRQRTR 390
+ RQR R
Sbjct: 62 QRQRQRQR 69
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 211 RNCTRTRHSSRHK-REC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRT 387
R R R R + R+ R R +Q ++ RH + + +++Q+++ + + R + RQR
Sbjct: 17 RQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRHRQRQRQRQRQRQRQRQRQRQRQRQRQRQ 76
Query: 388 R 390
R
Sbjct: 77 R 77
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 211 RNCTRTRHSSRHK-REC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRT 387
R R R R + R+ R RH+Q ++ R + + +++Q+++ + + R + RQR
Sbjct: 25 RQRQRQRQRQRQRQRQRQRQRQRHRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQ 84
Query: 388 R 390
R
Sbjct: 85 R 85
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 211 RNCTRTRHSSRHK-REC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRT 387
R R R R + R+ R HR +Q ++ R + + +++Q+++ + + R + RQR
Sbjct: 27 RQRQRQRQRQRQRQRQRQRQRHRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQ 86
Query: 388 R 390
R
Sbjct: 87 R 87
>SB_58346| Best HMM Match : HIG_1_N (HMM E-Value=5.8)
Length = 160
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 280 KQNEK*RHERHEHNT--HKEKQKRKVQTQARPQHRQRTRGPRAAPALLG 420
KQ ++ +RHE NT H E +KR V TQ+ R+R P A +G
Sbjct: 66 KQTQRTTRKRHEANTRMHDETRKRHVTTQSNRVERERKIRPGATGCSVG 114
>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
Length = 381
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/86 (24%), Positives = 41/86 (47%)
Frame = +1
Query: 142 RVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHN 321
R R+H++ S K+ R PR+ R R+ R+ R HR +++ + R + +
Sbjct: 260 RSRDHSSRRNSRDKSRDPDRDRPRDSERDRY-----RDIERDRHRDRRHSRDRDRKRSRS 314
Query: 322 THKEKQKRKVQTQARPQHRQRTRGPR 399
+ K + + + + R + R+R R R
Sbjct: 315 RDRRKSRSRSRDRRRSRSRERRRDDR 340
>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
Length = 1423
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +3
Query: 129 ARKQTSPKPQQLHVKSQENGISGSSSPTELHTDTAQQQAQTRMLKIHTPTQTEREIKTRT 308
A +T P+P+QL ++ G S S TE + +++ + + K PT+TE E T
Sbjct: 761 AALKTKPQPRQLPDSREKPGRSSSQGSTEQENQSVKKKKKRKKKK--KPTETEGESSTTK 818
Query: 309 ARAQHTQR 332
+ T++
Sbjct: 819 QQPMPTKK 826
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 32.7 bits (71), Expect = 0.33
Identities = 26/108 (24%), Positives = 44/108 (40%)
Frame = +1
Query: 133 ENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERH 312
+ K + N +++ KTA + R R S +H R Y H H +N H RH
Sbjct: 303 QRKSDAKNRNISVNQIKTANKHETFGRQRHGLRQSKKHHRNK-HYRH-HDRNH---HHRH 357
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLHLQ 456
H+ HK K + Q +++ + ++G LA L ++
Sbjct: 358 HHHHHKHHHKAANHHKLSTQKQRKNSDLKMEDDVMGNDVGLAAALAME 405
>SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 223 RTRHSSRHKREC*RYTHRHKQNEK*RHERHEH 318
R RHS H +Y H H Q H+RH H
Sbjct: 5 RHRHSHHHHYPHYQYNHHHDQQSHQHHDRHHH 36
>SB_45878| Best HMM Match : Sec8_exocyst (HMM E-Value=2.7)
Length = 184
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLHLQ 456
E THKE KRKV+ + +++ + A ALL D LAT ++
Sbjct: 97 EAKTHKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMK 144
>SB_34656| Best HMM Match : Ribosomal_L30_N (HMM E-Value=4)
Length = 184
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLHLQ 456
E THKE KRKV+ + +++ + A ALL D LAT ++
Sbjct: 97 EAKTHKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMK 144
>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
Length = 919
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLHLQ 456
E THKE KRKV+ + +++ + A ALL D LAT ++
Sbjct: 832 EAKTHKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMK 879
>SB_6955| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)
Length = 530
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLHLQ 456
E THKE KRKV+ + +++ + A ALL D LAT ++
Sbjct: 440 EAKTHKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMK 487
>SB_1448| Best HMM Match : Sec8_exocyst (HMM E-Value=2.7)
Length = 166
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLHLQ 456
E THKE KRKV+ + +++ + A ALL D LAT ++
Sbjct: 79 EAKTHKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMK 126
>SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)
Length = 518
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLHLQ 456
E THKE KRKV+ + +++ + A ALL D LAT ++
Sbjct: 431 EAKTHKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMK 478
>SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4)
Length = 623
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLHLQ 456
E THKE KRKV+ + +++ + A ALL D LAT ++
Sbjct: 540 EAKTHKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMK 587
>SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4)
Length = 934
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLHLQ 456
E THKE KRKV+ + +++ + A ALL D LAT ++
Sbjct: 847 EAKTHKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMK 894
>SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
Length = 1582
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLHLQ 456
E THKE KRKV+ + +++ + A ALL D LAT ++
Sbjct: 163 EAKTHKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMK 210
>SB_16936| Best HMM Match : Borrelia_orfA (HMM E-Value=2.2)
Length = 399
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLHLQ 456
E THKE KRKV+ + +++ + A ALL D LAT ++
Sbjct: 312 EAKTHKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMK 359
>SB_9961| Best HMM Match : Borrelia_orfA (HMM E-Value=2.3)
Length = 358
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLHLQ 456
E THKE KRKV+ + +++ + A ALL D LAT ++
Sbjct: 271 EAKTHKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMK 318
>SB_25854| Best HMM Match : Vicilin_N (HMM E-Value=5.5)
Length = 128
Score = 31.9 bits (69), Expect = 0.58
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +1
Query: 136 NKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHE 315
NK H++ T + TA + RT+H R +HKQN K + E
Sbjct: 58 NKTRTQHDHNTKQNSNTARSQQEQNSKANRTQHEQNSNRA----RTQHKQNSKTARTQRE 113
Query: 316 HNTHKEK 336
HN++ K
Sbjct: 114 HNSNTTK 120
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +1
Query: 166 TLSHKKTAYQGRPVPR---NCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEK 336
T +K +P R N TRT+H K+ + +QN K +HE N+++ +
Sbjct: 39 TRKKRKLVNTAKPQDRTNTNKTRTQHDHNTKQNSNTARSQQEQNSKANRTQHEQNSNRAR 98
Query: 337 QKRKVQTQARPQHRQ 381
+ K ++ R+
Sbjct: 99 TQHKQNSKTARTQRE 113
>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
Length = 697
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +1
Query: 223 RTRHSSRHK---REC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQR 384
R R+ R K R+ ++ +H+Q ++ R +RH+ +++Q+++ + Q R Q R+R
Sbjct: 214 RERYDRREKAAQRQQQQHLQQHRQQQQQRLDRHQQQQGQQQQQQQQRLQQRRQLRER 270
>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1002
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/97 (21%), Positives = 37/97 (38%)
Frame = +1
Query: 88 PGPASGPPLLQIVPPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RY 267
P A PP Q + +++ + H +S Y P P + T +++ + E
Sbjct: 486 PASARPPPSAQALNKTSEQEKEHEKVHVSTGSNHYPASPAPLPASPTAFNNKTRTEVQEE 545
Query: 268 THRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHR 378
H + +H T K+K K + R +HR
Sbjct: 546 GHELTGTSTAPRGKAQHKTIPIKRKPKHAGKHRAKHR 582
>SB_21262| Best HMM Match : IL1_propep (HMM E-Value=9.4)
Length = 306
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = -3
Query: 199 DPDMPF---SCDL--TCNCCGFGLVCFLAGLSEGGEDPRLGQVSF 80
DP+ P+ S DL C CCG G V L EDPR ++++
Sbjct: 140 DPERPYLGASPDLLINCECCGLGTVEIKCPLCIAREDPRTAELAY 184
>SB_57739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/66 (19%), Positives = 30/66 (45%)
Frame = +3
Query: 144 SPKPQQLHVKSQENGISGSSSPTELHTDTAQQQAQTRMLKIHTPTQTEREIKTRTARAQH 323
+P+ +H ++Q + T+LHT + +H P +T +T+T + +
Sbjct: 85 APRHANVHTRTQTRKCTYMHQDTQLHTREYTYTHPDTQIHVHAPRRTNTRKRTQTHKCTY 144
Query: 324 TQRKAK 341
T ++ +
Sbjct: 145 THQETQ 150
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 274 RHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPR 399
R K RH R + +K+ + K +T P+HR+R+R PR
Sbjct: 65 RSKSRTPPRHRRRSRSPNKKHSRSKSRTP--PRHRRRSRSPR 104
>SB_2310| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6)
Length = 725
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLHLQ 456
E THKE K+KV+ + +++ + A ALL D LAT ++
Sbjct: 638 EAKTHKESLKKKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMK 685
>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Frame = +1
Query: 142 RVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHS-------SRHKREC*RYTHRHKQNEK*R 300
R+R H+ + S + + RN R RH RHK C R RH+ + K
Sbjct: 842 RIRLHDKHEASRNRL-HDRHEASRNRLRDRHEVSRKRLRDRHKALCNRLCDRHEVSRKRL 900
Query: 301 HERHE------HNTHKEKQKRKVQTQARPQHRQRTR 390
+RH+ H+ H+ + R ++R R R
Sbjct: 901 RDRHKASRIRLHDRHEASRNRLHDRHEASRNRLRDR 936
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Frame = +1
Query: 142 RVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHS-------SRHKREC*RYTHRHKQNEK*R 300
R+R H+ + S + + RN R RH RHK C R RH+ +
Sbjct: 908 RIRLHDRHEASRNRL-HDRHEASRNRLRDRHEASRKRLRDRHKALCNRLRDRHEASRNRL 966
Query: 301 HERHEHNTHKEKQKRKV-QTQARPQH 375
+RHE + ++ + + + + + R +H
Sbjct: 967 RDRHEASRNRLRDRHEASRNRLRNRH 992
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = +1
Query: 220 TRTRHSSRHKREC*RYTHRHKQNEK*RHERHE------HNTHKEKQKRKVQTQARPQHRQ 381
+R R RHK C R RH+ + K +RH+ H+ H+ + R ++R
Sbjct: 808 SRDRLHDRHKALCNRLCDRHEVSRKRLRDRHKASRIRLHDKHEASRNRLHDRHEASRNRL 867
Query: 382 RTR 390
R R
Sbjct: 868 RDR 870
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 220 TRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKV-QTQARPQHR 378
+R R RHK R +H+ + H+RHE + ++ + + +V + + R +H+
Sbjct: 830 SRKRLRDRHKASRIRLHDKHEASRNRLHDRHEASRNRLRDRHEVSRKRLRDRHK 883
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 220 TRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKV-QTQARPQHR 378
+R R RHK R RH+ + H+RHE + ++ + + + + + R +H+
Sbjct: 896 SRKRLRDRHKASRIRLHDRHEASRNRLHDRHEASRNRLRDRHEASRKRLRDRHK 949
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 208 PRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEH 318
P + R RHS H + +Y H H H+ H H
Sbjct: 943 PESHKRHRHSHHHHYQHYQYNHHHDHQSHQHHDSHHH 979
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 223 RTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQR 384
R RHK+ + H+ ++ + H RH+ +++Q+ + +T R QR
Sbjct: 875 RLHQQQRHKKNDNPHQHQQQKQQHGYHHRHQQKHQQKQQQHQRKTSNRVSTHQR 928
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = +1
Query: 199 RPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHER-HEHNTHKEKQKRKVQTQARPQH 375
RP + S++ + RH Q K +H R H+ HK+ Q + QH
Sbjct: 839 RPAQHGTNSVSNDSKNMNKPINEKQRHHQQGKQQHHRLHQQQRHKKNDNPHQHQQQKQQH 898
>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +1
Query: 127 PPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHE 306
P E R H + T +H+ T + + T T ++RH TH H+ RH+
Sbjct: 425 PHETTRHDTHLHDTHTHETTRHDTH---LHDTHTHETTRHDTHL-HDTHTHETT---RHD 477
Query: 307 RHEHNTHKEKQKR 345
H H+TH + R
Sbjct: 478 THLHDTHTHETTR 490
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Frame = +1
Query: 154 HNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RY-THRHKQN--EK*RHERHEHNT 324
H + T H + P T H E R+ TH H + E RH+ H H+T
Sbjct: 409 HTHETPRHDTHLHDTHPHETTRHDTHLHDTHTHETTRHDTHLHDTHTHETTRHDTHLHDT 468
Query: 325 HKEKQKRKVQTQARPQHRQRT 387
H + R T H T
Sbjct: 469 HTHETTRH-DTHLHDTHTHET 488
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Frame = +1
Query: 220 TRTRHSSRHKREC*RY-THRHKQN--EK*RHERHEHNTHKEKQKRKVQTQARPQHRQRT 387
T T H E R+ TH H + E RH+ H H+TH + R T H T
Sbjct: 401 THTHLHDTHTHETPRHDTHLHDTHPHETTRHDTHLHDTHTHETTRH-DTHLHDTHTHET 458
>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1299
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 154 HNNYTLSHKKTAYQGRPVPRNCTRT-RHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHK 330
H++ H G + RT RH+ H+R + + K+ K + R K
Sbjct: 998 HSDTHTVHIARRTHGTNSDTHALRTYRHAGSHERRKRKRRRKRKRRRKRKRRRKRKRRRK 1057
Query: 331 EKQKRKVQTQARPQHRQRTRGPR 399
K++RK + + R + R+R R R
Sbjct: 1058 RKRRRK-RKRRRKRKRRRKRQRR 1079
>SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 210 TELHTDTAQQQAQTRMLKIHTPTQTEREIKTRTARAQHTQ 329
T+ H DT Q++ QTRM K + + ++ T HT+
Sbjct: 202 TDTHADTLQRRMQTRMQKTRSTQWEDPRLQLNTTSQVHTR 241
>SB_41521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 210 TELHTDTAQQQAQTRMLKIHTPTQTEREIKTRTARAQHTQRKAKTK 347
T T T+++ +R K +T +T+ KT+T+R T RK KTK
Sbjct: 8 TSRKTKTSRKTNTSR--KTNTSRKTKTSRKTKTSRKTKTSRKTKTK 51
>SB_29436| Best HMM Match : PAN (HMM E-Value=0.021)
Length = 419
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 141 TSPKPQQLHVKSQENGISGSSSPTELHTDTAQQQAQTRMLKIHTPTQT-EREIKTRTARA 317
T KPQ K+ E + S T+ T+T + Q+ T + + TQT E + T T
Sbjct: 81 TITKPQST-TKAPETQSTTESPETQSTTETPETQSTTESPETQSTTQTPETQSTTETPET 139
Query: 318 QHTQRKAKTK 347
Q T +T+
Sbjct: 140 QSTTETPETQ 149
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 223 RTRHSSRHKREC*RYTHRHKQNEK*RHERH--EHNTHKEKQKRK 348
R R S++H+ + R + +HK+ +K + +H +H +K KRK
Sbjct: 212 RKRESAKHRLKRKRESVKHKRKQKRKSAKHKRKHKRKSDKHKRK 255
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +1
Query: 241 RHKREC*RYTHRHK-QNEK*RH---ERHEHNTHKEKQKRKVQTQARPQHRQRTRGPR 399
+ KRE ++ H+ K + E +H + E HK KQKRK R R+ + R
Sbjct: 198 KRKRELAKHKHKRKRKRESAKHRLKRKRESVKHKRKQKRKSAKHKRKHKRKSDKHKR 254
>SB_47841| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
Length = 351
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/70 (20%), Positives = 33/70 (47%)
Frame = +1
Query: 169 LSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRK 348
+S + T + + + +S ++ E R HR KQ+ + +H+ + H++ R
Sbjct: 115 ISRETTEDRRKKTEEGSGEQQQNSSNESESTRGIHRSKQSRQAKHQSRQAKLHRDTGNRS 174
Query: 349 VQTQARPQHR 378
++ + QH+
Sbjct: 175 RRSSSPEQHQ 184
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +1
Query: 199 RPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHR 378
R PR+ R S R+ R R +++ + RH+R E + + + + +V+ + R + R
Sbjct: 1069 RDEPRDRDSKRGSRESSRDRDRLRERDRESSRDRHDR-ERDRDRSRDRDRVRDRDRDRDR 1127
Query: 379 QRTR 390
R R
Sbjct: 1128 DRDR 1131
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +1
Query: 262 RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPR 399
R+ HR N RH H + H + P H ++ + PR
Sbjct: 187 RHRHRQHYNRHRRHHHHHRHRHHHHHPNHPYSHHYPNHHRQQQQPR 232
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 229 RHSSRHKREC*RYTHRHKQNEK*R-HERHEHNTHKEKQKRKVQ 354
+H +RH+R + HRH + + H N H+++Q+ ++Q
Sbjct: 192 QHYNRHRRHHHHHRHRHHHHHPNHPYSHHYPNHHRQQQQPRLQ 234
>SB_59511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 268 THRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRG 393
T+RHK++ + R +RH+ N + + + K + R +H++ RG
Sbjct: 13 TYRHKEHVRGR-DRHKENV-RGQDRHKEHVRGRDRHKEHLRG 52
>SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)
Length = 608
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +1
Query: 175 HKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQ 354
H+K Q R PR RH+ R ++ +T RH +K R + H K +R V
Sbjct: 280 HRKDMAQTRTHPR-----RHAWREHKKAGTHTRRHMHAQKARRAVTHADMHARKARRAVT 334
Query: 355 TQARPQHRQR 384
H+ R
Sbjct: 335 HADMHAHKAR 344
>SB_57848| Best HMM Match : Ribosomal_L30_N (HMM E-Value=5.4)
Length = 184
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLHLQ 456
E T+KE KRKV+ + +++ + A ALL D LAT ++
Sbjct: 97 EAKTNKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMK 144
>SB_45371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +3
Query: 132 RKQTSPKPQQLHVKSQENGISGSSSPTELHTDTAQQQAQTRMLKIHTPTQTEREIKTRTA 311
RK++S K ++ + + S S TEL+ + ++ +T+ K ++TE+ K RT
Sbjct: 128 RKKSSSKDERKRKSKKIRTVQSSDSETELNQEKRKRIKRTKD-KTSRKSKTEKRKKERTV 186
Query: 312 RAQHTQRKAKTK 347
+ T ++ K
Sbjct: 187 KDSDTAQRRGIK 198
>SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)
Length = 531
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 271 HRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPR 399
HR + E+ RH+R E + E+ + + +AR + +R+R R
Sbjct: 223 HRDRDFERSRHDRRERDREVERARDQKDVRARDRDPERSRDYR 265
>SB_3893| Best HMM Match : PaREP8 (HMM E-Value=2.4)
Length = 339
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 235 SSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQAR 366
SSRH+ R + + E RH +H H K+++K +++ + R
Sbjct: 175 SSRHEHSGSR---KREHMESHRHSKHSHGQDKDQRKERIEDERR 215
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/43 (23%), Positives = 15/43 (34%)
Frame = +1
Query: 262 RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
RY H H H H H H+ + + + + H R
Sbjct: 308 RYHHHHHHRHHHHHHHHHHQRHRHRHRHRHRHHHHHHHEYNRR 350
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 232 HSSRHKREC*RYTH-RHKQNEK*RHERHEHNTHKEKQKRKVQT 357
H RH + H RH+ + RH H H+ H+ ++ + T
Sbjct: 313 HHHRHHHHHHHHHHQRHRHRHRHRHRHHHHHHHEYNRRHRYFT 355
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +1
Query: 232 HSSRHKREC*RYTHRHKQNEK*RHE-RHEHNTH 327
H H R + H H Q + RH RH H+ H
Sbjct: 310 HHHHHHRHHHHHHHHHHQRHRHRHRHRHRHHHH 342
>SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1450
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 121 IVPPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRH 279
+VP K++ N T+S K+ +GR +P + R +H R + T H
Sbjct: 141 VVPTRYKKLILEKNGTISRKEFVCEGRKIPLDDIRKDLLEKHSRFIRQNTDEH 193
>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 216 LHTDTAQQQAQTRMLKIHTPTQTEREIKTRTARAQHTQRKAKT 344
L+T T Q TR K+HT TQ + T RA HT + +T
Sbjct: 110 LNTYTQQHAHSTR--KLHTYTQHAHLTRHSTTRALHTHTQTRT 150
>SB_28641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 310 HEHNTHKEKQKRKVQTQARPQHRQRTRGPR 399
H H+ +++R+ + +ARP+ R+ R PR
Sbjct: 7 HRHHRRHSRRRRRPRRRARPRRRRPCRRPR 36
>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
Length = 138
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 223 RTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTH 327
R R+ H + + H H N H++H H+ H
Sbjct: 42 RHRYHHHHHHQHNHHQHHHHHNHHHHHQQHHHHHH 76
>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
Length = 334
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Frame = +1
Query: 277 HKQNEK*RHERHE-HNTHKEKQKR----KVQT-QARPQHRQRTRGP 396
H+++ HER E N HK K KV++ QARP H ++ R P
Sbjct: 231 HREDSLSEHEREEVKNKHKPMIKADATYKVKSDQARPNHERKQRSP 276
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Frame = +1
Query: 139 KRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEH 318
KR R+ + S +K ++ P R+ + R+S RHK RY H+ + RH R
Sbjct: 220 KRSRSPRKRSRSPRKGSHT--PKKRSRSPRRNSQRHKERS-RY---HRSRSRSRHRRSRS 273
Query: 319 NTHK--------EKQKRKVQTQARPQHRQRTR 390
N+ +K +RK ++++R + R +R
Sbjct: 274 NSPSMRKSDRKFKKSQRKSRSRSRNRSRSHSR 305
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 202 PVPRNCTRTRH---SSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQAR 366
P P + ++T + S +H++ + H+H + K + + T K+K K+K + +++
Sbjct: 389 PTPDSRSQTSNGDKSRKHRKRKKTHKHKHAKKSKTEEQTDDGKTDKKKSKKKSKDKSK 446
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 232 HSSRHKREC*RYTHRHKQNEK*RHERHEHNTHK-EKQKRKVQTQARPQHRQRTR 390
H SR + R RH ++ H RH +H EK+K K + + ++++R
Sbjct: 256 HRSRSRSRSPR--RRHSRSRSPTHRRHRSRSHSPEKKKHKKKEKKEKDEKRKSR 307
>SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 313 EHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRL 435
E THKE KRKV+ + +++ + A ALL D L
Sbjct: 1064 EAKTHKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDL 1104
>SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 177 QENGISGSSSPTELHTDTAQQQAQTRMLKIHTPTQTEREIKTRTARAQHTQRKAKTK 347
Q+NG S SSS + H ++ + T + TERE++ R + Q+++ + K +
Sbjct: 175 QQNGRSSSSS-SSCHDESENTASTTEFADLKAKYHTERELRLR-VQQQNSELQEKLR 229
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 274 RHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
R K+ EK E+ E + +EK+K K + + + + R+R +
Sbjct: 625 REKEREK-EKEKEERDKEREKEKEKEKEREKEKEREREK 662
>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2973
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 271 HRHKQNEK*RHERHEHNTHKEKQKRKVQTQARP-QHRQRTR 390
H KQN K H R HN + +++ + RP ++ +TR
Sbjct: 1103 HAAKQNYKDHHRRRSHNRPRRRRRGDNKATTRPSRNTNKTR 1143
>SB_36288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +1
Query: 211 RNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEH-NTHKEKQKRKVQTQARPQHRQR- 384
R +T + RHK+ T RHK+ + RH+ T ++ +K QT +H++
Sbjct: 102 RKKAQTLLTGRHKKAQILLTRRHKKAQTLLTRRHKKAQTLLTRRHKKAQTLLTRRHKKAQ 161
Query: 385 ---TRGPRAAPALLGLRDRLATQL 447
TR + A LL R + A L
Sbjct: 162 ILLTRRHKKAQILLTRRHKKAQTL 185
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +1
Query: 106 PPLLQIVPPENKRVRNHNNYT-LSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHK 282
PP+ + P N+ + +H T S K + G P RH E + T +H+
Sbjct: 378 PPVASPLSPTNRNIPHHKPVTPTSPLKHSTSGPFSP-----PRHHGHGGLEAIQ-TSKHQ 431
Query: 283 QNEK*RHERHEHNTH 327
Q++ H H H+ H
Sbjct: 432 QDQHHHHHHHHHHRH 446
>SB_28101| Best HMM Match : DiS_P_DiS (HMM E-Value=6.6)
Length = 334
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 181 KTAYQGRPVPRNCTRTRHSSRHKR-EC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQT 357
+ + G P P + SR KR + R R + ++ R + EH ++K+KR+ +
Sbjct: 172 RLGFSGEPPPPPPLPPQSKSRSKRTQGGRRRRRRSRLDEIRQVQSEHGGERKKKKRRPRD 231
Query: 358 QARPQHRQRTRGPR 399
+ +R R R
Sbjct: 232 EPEKSGERRRRRRR 245
>SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)
Length = 1656
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +1
Query: 169 LSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRK 348
L++K+T + + CT+ H K C + + ++ +K RH R ++ H R+
Sbjct: 1336 LNNKQTRLPDQDIQNPCTKITHPLMAKI-CNKV--QQQKQKKHRHHRRHYHHHHHHHHRR 1392
Query: 349 VQTQARPQ 372
+RP+
Sbjct: 1393 HHHHSRPE 1400
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,243,487
Number of Sequences: 59808
Number of extensions: 286860
Number of successful extensions: 1602
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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