Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00037
(386 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 78 3e-15
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026) 42 2e-04
SB_17127| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.57
SB_3772| Best HMM Match : EGF (HMM E-Value=6.3e-06) 29 1.3
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066) 27 4.0
SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 27 4.0
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002) 27 4.0
SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 27 5.3
SB_12592| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12) 27 7.1
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6) 27 7.1
SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 26 9.3
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 77.8 bits (183), Expect = 3e-15
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +2
Query: 17 SKMVNVPKQRRTYXXXXXXXXXXXE--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIF 190
S +VNVPKQR+T+ +QYK K AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 6 SPVVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVF 65
Query: 191 XXXXXXXXXIVLRLECADCKVNHRL 265
IVLR+EC CK ++
Sbjct: 66 HKKAKTTKKIVLRMECTQCKYRKQM 90
Score = 54.4 bits (125), Expect = 3e-08
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +1
Query: 259 QVALKRCKHFELGGDKKRKGQMIQF 333
Q+ LKRCKHFELGGDKKRKGQMIQF
Sbjct: 89 QMPLKRCKHFELGGDKKRKGQMIQF 113
>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
Length = 39
Score = 41.9 bits (94), Expect = 2e-04
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 259 QVALKRCKHFELGGDKKRK 315
Q+ LKRCKHFELGGDKKRK
Sbjct: 21 QMPLKRCKHFELGGDKKRK 39
>SB_17127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 30.3 bits (65), Expect = 0.57
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 293 SSKCLHLFNATCDSPCNLHTQDGAQF 216
SSKCLH+ N D P NL + A+F
Sbjct: 38 SSKCLHVINEDIDIPSNLPSSMSAKF 63
>SB_3772| Best HMM Match : EGF (HMM E-Value=6.3e-06)
Length = 519
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 326 IICPFLFLSPPSSKCLHLFNATCDSPCNL 240
++C L PPSS+CL + + PCNL
Sbjct: 454 MMCVNLDDRPPSSQCLQALQTSEEKPCNL 482
>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 6 AERTQKW*TYQNSAGRTAKNVNATKYTRNHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNP 185
AE +W T + + +K + + K R T P + D+ +R+T VSP
Sbjct: 1021 AESFHRWLTQRQFCAQYSKELASGKTNREWVTALPIV-----ISDINATKTRMTGVSPKD 1075
Query: 186 SSKRRQKPLR 215
+ K R+ PL+
Sbjct: 1076 AIKLRRVPLK 1085
>SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066)
Length = 716
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 164 NPAVYDHNVFYPGQRAFPWTF-CTVIPCVLCGIYIFCSTSCA 42
+P + DH VFYP P TF T+ P + I ++ ST+ A
Sbjct: 167 HPILNDHGVFYPKALPHPLTFEITLAP--VSDIVVYSSTTPA 206
>SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1359
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 164 NPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCA 42
+P + DH VFYP P TF + + I ++ ST+ A
Sbjct: 1172 HPILNDHGVFYPKALPHPLTF-EITLATVSDIVVYSSTTPA 1211
>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
Length = 1725
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 164 NPAVYDHNVFYPGQRAFPWTF-CTVIPCVLCGIYIFCSTSCA 42
+P + DH VFYP P TF T+ P + I ++ ST+ A
Sbjct: 1243 HPILNDHGVFYPKALPHPLTFEITLAP--VSDIVVYSSTTQA 1282
>SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 253 ESQVALKRCKHFELGGDKKR 312
+S++A RC H LGGD +R
Sbjct: 495 QSRIASPRCAHRPLGGDSRR 514
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 27.1 bits (57), Expect = 5.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 346 LEAFKIGSSVPFSSCHHRAQSACI 275
+E + +G S+ + C H SACI
Sbjct: 261 MEEYAVGDSMKYLPCRHNFHSACI 284
>SB_12592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 27.1 bits (57), Expect = 5.3
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +3
Query: 30 TYQNSAGRTAKNVNATKYTRNHSTKSPR----KGTLPRVEDV--MIVNSRVTVVSPNPSS 191
T +S G + T +T K+ R G RV+++ ++ R T+ PN S
Sbjct: 43 TSTSSRGARTQTTAETSFTTEGRCKAKRLQAVDGVTERVQELQGVVATDRETIDDPNTSE 102
Query: 192 KRRQK 206
RRQ+
Sbjct: 103 SRRQE 107
>SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)
Length = 501
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 104 KSKERHAAQGRRRYDRKQQGY 166
K K+RHA Q YD+K Q Y
Sbjct: 471 KQKDRHARQLGINYDKKHQNY 491
>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
Length = 399
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -1
Query: 140 VFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 33
VFYP P V+ C+ + + C C +LV
Sbjct: 105 VFYPPSNGLPVFTLLVMDCLCFTLLVMCYLCCTLLV 140
>SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 986
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 36 QNSAGRTAKNVNATKYTRNHSTKSPRKGT 122
QNS TA+N + +K R HS P K T
Sbjct: 83 QNSVSSTAQNGSKSKRKRKHSELDPVKYT 111
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 26.2 bits (55), Expect = 9.3
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +3
Query: 54 TAKNVNATKYTRNHSTKS---PRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQ 203
T K + T+ T+ T++ P + T PR+ I +R+T P S R Q
Sbjct: 460 TRKRITLTRITQTRITRTRIIPTRITKPRITRTRITKTRITRKIPITSGCRLQ 512
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,522,412
Number of Sequences: 59808
Number of extensions: 249589
Number of successful extensions: 1054
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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