Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00035
(761 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 37 0.016
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 33 0.25
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_52161| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_3518| Best HMM Match : Ank (HMM E-Value=0.15) 30 1.8
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 29 4.1
SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09) 29 5.5
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 28 7.2
SB_47685| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_8055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_8890| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 569 PSVPPNPVMEVKLGFKLTS-FRYNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTTNIKL 745
P + N +++KLG L N D LT + W+D + WNPD F G +I +
Sbjct: 49 PVLNVNDPVQLKLGIMLRQVIDLNERDQILTINVWIRQYWKDHLLKWNPDDFGGIKSINI 108
Query: 746 RQGQI 760
++
Sbjct: 109 APDRV 113
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 593 MEVKLGFKLTS-FRYNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTTNI 739
+++KLG L + + LTT + W D + WNPD F+G +I
Sbjct: 475 VQLKLGIMLRQVIDLDEREQILTTNVWIRQYWADHFLQWNPDDFSGIKSI 524
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 593 MEVKLGFKLTSFRYNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTTNIKLRQGQI 760
MEV F L F + + LTT + + W+D + WNP+ F G +I + +
Sbjct: 1 MEVVNQFLLI-FAQDEKNQILTTNVWIRLYWKDHLLNWNPEDFGGVKSINVEPNNV 55
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 31.9 bits (69), Expect = 0.58
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 656 TTTAAVVVSWEDDSMAWNPDKFNGTTNIKLRQGQI 760
TT + + W+D + WNP + G T I L I
Sbjct: 542 TTNVRLRMGWKDAFLQWNPADYGGVTQINLEASDI 576
>SB_52161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = -1
Query: 719 ICPDSTPCYHLPMTRQQPLWSSIWSPKYYTESWLA*IRVLLP*RDW 582
+ PD +P L + R P WSS SP Y+ES+ + V+L RDW
Sbjct: 51 VIPDDSPGDPLVLERPPPRWSSN-SP--YSESYYNSLAVVLQRRDW 93
>SB_3518| Best HMM Match : Ank (HMM E-Value=0.15)
Length = 159
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = -1
Query: 713 PDSTPCYHLPMTRQQPLWSSIWSPKYYTESWLA*IRVLLP*RDW 582
P+S+P L + R P WSS SP Y+ES+ + V+L RDW
Sbjct: 38 PNSSPGDPLVLERPPPRWSSN-SP--YSESYYNSLAVVLQRRDW 78
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 617 LTSFRYNTLDSK---LTTTAAVVVSWEDDSMAWNPDKFNGTTNIKLR 748
LT + ++T D K + T + W D +AWN ++ G + LR
Sbjct: 22 LTLYDFHTQDEKNEVIQTFLILEQMWNDTRLAWNETEYGGIKQMTLR 68
>SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)
Length = 843
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 98 SSRCTSRSKPPATDT*CSLKSLILASVIPFTKLWSAVEGTS 220
++R +S+ PP T C +KS + + KLW+ S
Sbjct: 770 ATRVSSKLHPPPTTFICGIKSFLKMCISSLNKLWTGTRKRS 810
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 638 TLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTTNIKL 745
T+ LT + V WE+ +AWN ++ G + L
Sbjct: 33 TVKLGLTLNQIMDVKWENPLVAWNKSEYGGIVQVNL 68
>SB_47685| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 442 ASTPFQAAKLKYFTDNGSTSLKLIKGSTCPSLPNSTRPSSDI 317
+S P+Q +L Y T GST S+C L R S DI
Sbjct: 17 SSVPYQLLQLNYRTSLGSTCADSGITSSCTQLGQGERRSLDI 58
>SB_8055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 442 ASTPFQAAKLKYFTDNGSTSLKLIKGSTCPSLPNSTRPSSDI 317
+S P+Q +L Y T GST S+C L R S DI
Sbjct: 140 SSVPYQLLQLNYRTSLGSTCADSGITSSCTQLGQGERRSLDI 181
>SB_8890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 442 ASTPFQAAKLKYFTDNGSTSLKLIKGSTCPSLPNSTRPSSDI 317
+S P+Q +L Y T GST S+C L R S DI
Sbjct: 17 SSVPYQLLQLNYRTSLGSTCADSGITSSCTQLGQGERRSLDI 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,122,786
Number of Sequences: 59808
Number of extensions: 551833
Number of successful extensions: 1457
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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