Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b12r
(335 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3) 32 0.13
SB_42229| Best HMM Match : Na_H_Exchanger (HMM E-Value=3.9) 31 0.18
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.31
SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29) 30 0.54
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_51592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37) 29 1.2
SB_56515| Best HMM Match : Ribosomal_L30 (HMM E-Value=5.6) 28 1.6
SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 28 1.6
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 1.6
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22) 27 2.9
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 27 3.8
SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024) 27 3.8
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_27578| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30) 27 5.0
SB_54807| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_40768| Best HMM Match : TM_helix (HMM E-Value=7.7) 26 6.6
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_27571| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_18642| Best HMM Match : CsrA (HMM E-Value=8.7) 26 8.7
SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_28069| Best HMM Match : RVT_1 (HMM E-Value=1.8e-28) 26 8.7
SB_27987| Best HMM Match : RVT_1 (HMM E-Value=4.8e-32) 26 8.7
SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 26 8.7
>SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)
Length = 1165
Score = 31.9 bits (69), Expect = 0.13
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -3
Query: 228 TATNLLTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVLAVGSK 55
T T L T L L ITTL+ T + V IT TLP +T++LPL ++ +
Sbjct: 541 TTTLPLVVITTILPLVTITTLLPLVVITTILPLVVITTTLPLVAITTTLPLVIITTILPL 600
Query: 54 EYLRKLITK*CINNI 10
+ ++ IN I
Sbjct: 601 VAINTILPLVAINTI 615
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -3
Query: 237 LKETATNLLTTARTSLILPKITTLMETATNLSTTVH---ITWTLPKADLTSSLPL 82
L + + +L L ITT++ T ++TT+H IT TLP +T+ LPL
Sbjct: 502 LNHASKKAILAITNTLPLVVITTILHLVT-ITTTLHLVTITTTLPLVVITTILPL 555
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 213 LTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVLAV 64
L T L L ITT++ T + V IT TLP +T+ LPL + +
Sbjct: 645 LVVITTILPLVVITTILHLVAITTILPLVVITTTLPLVTITTILPLVAITTI 696
>SB_42229| Best HMM Match : Na_H_Exchanger (HMM E-Value=3.9)
Length = 678
Score = 31.5 bits (68), Expect = 0.18
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -3
Query: 243 PTLKETATNLLTTARTSLILPKITT--LMETATNLSTTVHITWTLPKADLTSSLPLSLVL 70
P + T L T T+L L ITT L+ T + V IT TLP +T+ LPL ++
Sbjct: 272 PLVAITTILHLVTITTTLPLVVITTILLLVVITTILPLVAITTTLPLVAITTILPLVVIT 331
Query: 69 AV 64
+
Sbjct: 332 TI 333
Score = 29.5 bits (63), Expect = 0.71
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -3
Query: 243 PTLKETATNLLTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVL 70
P + T T L T L L ITT++ T + V IT TLP +T+ LPL +
Sbjct: 614 PLVVITTTLPLVVITTILPLVAITTILPLVAITTILPLVVITTTLPLVTITTILPLVAIT 673
Query: 69 AV 64
+
Sbjct: 674 TI 675
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = -3
Query: 222 TNLLTTARTSLILP--KITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVLAV 64
T +L + ILP ITT++ T + V IT TLP +T+ LPL ++ +
Sbjct: 79 TTILPLVDITTILPLVAITTILPLVVITTILPLVVITTTLPLVAITTILPLVVITTI 135
Score = 27.5 bits (58), Expect = 2.9
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -3
Query: 243 PTLKETATNLLTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVL 70
P + T L T L L ITT++ T + V IT TLP +T+ LPL ++
Sbjct: 470 PLVAITTILPLVVITTILPLVVITTILPLVVITTILPLVVITTTLPLVAITTILPLVVIT 529
Query: 69 AV 64
+
Sbjct: 530 TI 531
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -3
Query: 243 PTLKETATNLLTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVL 70
P + T L T L L ITT++ T + V IT TLP +T+ LPL +
Sbjct: 515 PLVAITTILPLVVITTILPLVVITTILHLVAITTILPLVAITTTLPLVVITTILPLVAIT 574
Query: 69 AV 64
+
Sbjct: 575 TI 576
Score = 26.2 bits (55), Expect = 6.6
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -3
Query: 243 PTLKETATNLLTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVL 70
P + T L T L L ITT++ T + V IT TLP +T+ LPL +
Sbjct: 578 PLVAITTILPLVAITTVLPLVVITTILPLVVITTILPLVVITTTLPLVVITTILPLVAIT 637
Query: 69 AV 64
+
Sbjct: 638 TI 639
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.7 bits (66), Expect = 0.31
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = -2
Query: 223 YEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAY--YVDPPQGRPYFKPTPFP 77
Y P N PY P Y P N Y P N Y +PP P + P P P
Sbjct: 116 YPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNP 167
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = -2
Query: 223 YEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAY----YVDPPQGRPYFKPTPFP 77
Y P N PY P Y P+ N Y P N Y Y PP P P P P
Sbjct: 124 YPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPP 177
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = -2
Query: 223 YEPIDNRPYIVNPPKDYNPNGN-GYEPIDNGAYYVDPPQGRPYFKPTPFP 77
Y P N PY P Y P N Y P N Y PP + P P P
Sbjct: 108 YPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPY---PPSPNAPYPPPPNP 154
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = -2
Query: 223 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG-RPYFKPTP 83
Y P N PY P Y P N P Y PP P + P P
Sbjct: 179 YPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYPPPP 226
>SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
Length = 447
Score = 29.9 bits (64), Expect = 0.54
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 229 NGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPG 74
NG P + P+ PP Y P NG +P+ Y+ P G+P + PF G
Sbjct: 314 NGQPPYNTPPFNGQPPY-YTPPFNG-QPL----YHTPPFNGQPPYNTPPFNG 359
Score = 29.1 bits (62), Expect = 0.94
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = -2
Query: 226 GYEPIDNRPYIVNPPKDYN-PNGNGYEPID----NG--AYYVDPPQGRPYFKPTPFPG 74
G P + P+ PP YN P NG P + NG YY P G+P + PF G
Sbjct: 293 GQPPYNAPPFTGQPP--YNAPPFNGQPPYNTPPFNGQPPYYTPPFNGQPLYHTPPFNG 348
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = -3
Query: 228 TATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAVGSKEY 49
T TN+ TT T++ ITT + T T ++TT IT T+ +T+++ +++ +
Sbjct: 1063 TITNITTTINTTINTTIITTTI-TTTIITTT--ITTTIITTTITTTITTTIITTTVTTTI 1119
Query: 48 LRKLIT 31
+ IT
Sbjct: 1120 ITTTIT 1125
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = -3
Query: 222 TNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAVGSKEYLR 43
T +TT T + + ITT + T N TT+ IT T+ +T+++ +++ +
Sbjct: 1052 TITITTTTTIITITNITTTINTTIN--TTI-ITTTITTTIITTTITTTIITTTITTTITT 1108
Query: 42 KLIT 31
+IT
Sbjct: 1109 TIIT 1112
>SB_51592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -3
Query: 228 TATNLLTTARTSLILPKITTLMETATNLSTTVH--ITWTLPKADLTSSLPLSLV 73
T + ++TT + +I ITT+ + T L+TT+ I LP TS PL ++
Sbjct: 20 TISQIITTL-SRIITDPITTISQIITTLATTISQIIRTPLPIITTTSRTPLRII 72
>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
Length = 352
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 228 TATNLLTTARTSLILPKITTLMETATNLSTTVHITWTL 115
T TN++TTA T+ I+T+ T T +T + I T+
Sbjct: 297 TNTNIITTATTTTTSTTISTITVTITTTTTIIIIVITI 334
>SB_56515| Best HMM Match : Ribosomal_L30 (HMM E-Value=5.6)
Length = 183
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 255 CWLWPTLKETATNLLTTARTSLILPKITTLMETAT 151
CW++PT+ ++A + + RT L L +I L AT
Sbjct: 129 CWIFPTVGKSAEEITSILRT-LFLRRIPLLFSKAT 162
>SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = -3
Query: 240 TLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLV 73
T+ AT + T T++I TT+ T T ++TT+ T T +T+++ +++
Sbjct: 12 TIITNATTTIITLSTTIITTT-TTITTTTTTITTTITPTITTTTTIITTTITTTII 66
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 210 TTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSS 91
T A + + PK TT +ET TTV + T P + TS+
Sbjct: 229 TDAPATTLAPKTTTALETTVEAKTTV-VPETTPALETTSA 267
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3
Query: 225 ATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTS 94
AT +TT ++ P TT TAT +TT T T P A T+
Sbjct: 96 ATATITTYTATVTAPNATTTTPTATTTTTTT-TTTTTPYATTTT 138
>SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = -2
Query: 244 ANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 86
A A +GY+ DN Y + NGY DN P P +K T
Sbjct: 382 AEAHVDGYQTYDNPTYDTEHETHAEAHVNGYPTYDNPTCDTHSPARAPAYKRT 434
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 210 TTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSS 91
T A + + PK TT +ET TTV + T P + TS+
Sbjct: 2291 TDAPATTLAPKTTTALETTVEAKTTV-VPETTPALETTSA 2329
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 210 TTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSS 91
T A + + PK TT +ET TTV + T P + TS+
Sbjct: 776 TDAPATTLAPKTTTALETTVAAKTTV-VPETTPALETTSA 814
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +2
Query: 23 HYFVINFLRYSLLPTASTRERGRLEVRSALGRVHVICT 136
HY + F R PT S R R R E A RVHV C+
Sbjct: 973 HYLKVGFERLPSPPTNSRRRRLRSE---ADARVHVTCS 1007
>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 170 P*WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNILEN 39
P + L T + CI R +PT + P PW +++N+ ++
Sbjct: 560 PRLEMLNTLLRECIDRHAPLKPTKMTRPPAPWLKELDIQNLQQD 603
>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 98 VRSALGRVHVICTVVDRFVAVSIRVVIFGRINDVRAVVNRFVAVS 232
VR + R VV R S+RVV+ + VR V+ R+VA++
Sbjct: 772 VRVVMRRYVTSVRVVMRRYVASVRVVMPRYVASVRVVMRRYVAIA 816
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 98 VRSALGR-VHVICTVVDRFVAV-SIRVVIFGRINDVRAVVNRFVA 226
VR + R V + V+ R+VA+ S+RVV+ + VR V+ R+VA
Sbjct: 794 VRVVMPRYVASVRVVMRRYVAIASVRVVMRRYVASVRVVMRRYVA 838
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 98 VRSALGRVHVICTVVDRFVAVSIRVVIFGRINDVRAVVNRFVA 226
VR + R VV R S+RVV+ + VR V+ R+VA
Sbjct: 818 VRVVMRRYVASVRVVMRRYVASVRVVMRRYVTSVRVVMRRYVA 860
>SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22)
Length = 266
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/53 (26%), Positives = 32/53 (60%)
Frame = -3
Query: 222 TNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAV 64
TN++TT+ T++I T+ T T ++ T+ IT T+ +T ++ +++ + +
Sbjct: 168 TNIITTSNTNIITTTTITITITIT-ITITITITITI-TITITITITITITITI 218
>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 515
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 241 NAQGNGYEPIDNRPYIVNPPKDYNPNGNGYE--PIDNGAYYVDPP 113
N G ++P RPY P + PNG+ E P++N +PP
Sbjct: 187 NHSGPPFKP-GQRPYQHGGPDQFGPNGHTEEMRPLENRGPPFEPP 230
>SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024)
Length = 249
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -3
Query: 222 TNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLA 67
T TT + ITT T T +STT+ T T T++ +++++
Sbjct: 84 TTTTTTFSATTTTTTITTTTTTTTTISTTISTTTTTTTISTTTTTITAVIIS 135
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -3
Query: 216 LLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLA 67
+++T T+ TT+ T T +TT+ IT T+ T + ++ ++
Sbjct: 133 IISTTTTTTSTANTTTITATITTTTTTITITATITTITTTITATITTTIS 182
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 240 TLKETAT-NLLTTARTSLILPKITTLME-TATNLSTTVHITWTLPKADLTS 94
T ET T +L+TTA + +TT E T +L+TT + T P+ S
Sbjct: 164 TAPETTTASLVTTAPETTTASLVTTAPEATTASLATTASLATTAPETTTAS 214
Score = 27.1 bits (57), Expect = 3.8
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -3
Query: 249 LWPTLKETAT-NLLTTARTSLILPKITTLMETAT-NLSTTVHITWTLPKADLTSSLPLSL 76
L T ET T +L+TTA + +TT ET T +L+TT T T A +L
Sbjct: 311 LLTTAPETTTASLVTTAPEATTASLVTTAPETTTASLATTAPETTTASLATTAPETTTAL 370
Query: 75 VLAVGSKEYLRKLIT 31
++ + L T
Sbjct: 371 LVTTAPETATASLAT 385
Score = 26.6 bits (56), Expect = 5.0
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 240 TLKETAT-NLLTTARTSLILPKITTLME-TATNLSTTVHITWTLPKADLTSSLPLSLVLA 67
T ET T +L TTA + +TT E T +TT + T P+A S +L++
Sbjct: 74 TAPETTTASLATTAPETTTASFLTTAPEATTAPETTTASLVTTAPEATTASLATTALLVT 133
Query: 66 VGSKEYLRKLIT 31
+ L+T
Sbjct: 134 TAPEATTASLVT 145
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 228 TATNLLTTARTSLILPKITTLMETAT-NLSTTVHITWTLPKA 106
T +L+TTA + +TT ET T +L+TT T P+A
Sbjct: 662 TTASLVTTAPEATTASLLTTAPETTTASLATTAPEATTAPEA 703
>SB_27578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -2
Query: 202 PYIVNPPKDY--NPNGNGYEPIDNGAYYVDPPQG 107
P+ ++P Y +PNG Y NG YV P G
Sbjct: 8 PFSISPGVQYVFHPNGVQYVTQPNGVQYVTHPNG 41
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -2
Query: 199 YIVNPPKDY--NPNGNGYEPIDNGAYYVDPPQGRPY 98
Y+ +P Y +PNG Y NG +V P G Y
Sbjct: 116 YVTHPNAQYVAHPNGAQYVTHPNGVQFVTHPNGVQY 151
>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
Length = 3015
Score = 26.6 bits (56), Expect = 5.0
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = -3
Query: 228 TATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAVGSKEY 49
T ++ TT T+ I ITT T TT HI T+P A + +++ + + +
Sbjct: 1095 TTAHINTTITTAHINTTITTAHINTT--ITTAHINTTIPTAHINTTITTAHTNTTITTAH 1152
Query: 48 LRKLITK*CIN 16
+ IT IN
Sbjct: 1153 INTTITTAHIN 1163
>SB_54807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -3
Query: 228 TATNLLTTARTSLILPKITTLMETATNL---STTVHITWTLPKADL 100
T T ++TT T++I+ ITT + T + +TT IT + A L
Sbjct: 77 TTTIIITTITTTIIITTITTTIATTITIIITTTTTIITTIITTAAL 122
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 243 PTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLP 112
PT ++T TNL +T R + TT + + +TT T T+P
Sbjct: 188 PTTQQTTTNLPST-RQPTTNQQTTTTLPSTKQPTTTQQTTTTIP 230
>SB_40768| Best HMM Match : TM_helix (HMM E-Value=7.7)
Length = 122
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -3
Query: 228 TATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAV 64
T T + T T +I ITT+ T + TT+ IT T + +++ ++++ +
Sbjct: 6 TITITMITTITVIITTMITTITVIITTMITTITITTTTIITTMITTIITTVIIII 60
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -2
Query: 217 PIDNRPYIVNPPKDYN---PNGNGYEPIDNGAYYVDPPQGR 104
P+D++P IV+ PN + + + G ++PP+G+
Sbjct: 364 PVDSQPLIVDMASSQGNQIPNSSSKQSRNEGTELINPPEGQ 404
>SB_27571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 280 FFMIFVLAL---LAMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYE 149
F +IF++A+ A +++ Y P++ I P D + G+GYE
Sbjct: 28 FVLIFLVAVEPPFAKQHSEDAQYAPLNPGTRIATIPGDRDKKGHGYE 74
>SB_18642| Best HMM Match : CsrA (HMM E-Value=8.7)
Length = 293
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -3
Query: 204 ARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAVGSKEYL 46
A T L TT++ T T L + IT TLP +++ +LP S ++ Y+
Sbjct: 112 AATMLYSNHATTMLITVTLLPS--FITITLPPSNIIVTLPPSYIIVTLPPSYI 162
>SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1513
Score = 25.8 bits (54), Expect = 8.7
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = -2
Query: 319 FSPVITRDHIKMKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPID 140
+ P ITRD K+ + L + +G + DN P N P P G +P+
Sbjct: 694 YKPKITRDQAKVDLANEKIRHFLIESTKKGVKLKGCDNEPVFANGP-PVPPIKEGSKPVQ 752
Query: 139 NGAYY 125
A Y
Sbjct: 753 LLAKY 757
>SB_28069| Best HMM Match : RVT_1 (HMM E-Value=1.8e-28)
Length = 593
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 127 YVDPPQGRPYFKPTPFPGARGGK 59
YVDP YFKP P AR K
Sbjct: 379 YVDPQAKPKYFKPRPLEYARRQK 401
>SB_27987| Best HMM Match : RVT_1 (HMM E-Value=4.8e-32)
Length = 779
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 127 YVDPPQGRPYFKPTPFPGARGGK 59
YVDP YFKP P AR K
Sbjct: 436 YVDPQAKPKYFKPRPLEYARRQK 458
>SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 1597
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 127 YVDPPQGRPYFKPTPFPGARGGK 59
YVDP YFKP P AR K
Sbjct: 592 YVDPQAKPKYFKPRPLEYARRQK 614
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,673,275
Number of Sequences: 59808
Number of extensions: 233326
Number of successful extensions: 1030
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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