Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a22f
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041) 105 4e-23
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17) 30 1.7
SB_31707| Best HMM Match : Extensin_2 (HMM E-Value=0.19) 29 3.0
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_9846| Best HMM Match : DUF605 (HMM E-Value=0.046) 29 3.0
SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6) 29 3.9
SB_13211| Best HMM Match : Extensin_2 (HMM E-Value=0.0053) 29 3.9
SB_11512| Best HMM Match : E-MAP-115 (HMM E-Value=1.4) 29 3.9
SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2) 29 3.9
SB_27602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 29 3.9
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09) 28 6.9
SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18) 28 6.9
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0) 27 9.1
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031) 23 9.4
>SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041)
Length = 128
Score = 105 bits (251), Expect = 4e-23
Identities = 55/112 (49%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Frame = +1
Query: 247 RFNDLGSNCIDSKRIVPFSTSSLALKDEKVKVCFVLNDGKRLEAEAKIGDTLLDVVVNND 426
R S I ++R V K E V + FV DG R +AK+GD+LLDV +ND
Sbjct: 19 RLASRASASILARRYVSNGKEQTKAKHETVSITFVDRDGDRQTVKAKVGDSLLDVAKDND 78
Query: 427 LNIEGYGACEGTLTCSTCHVILKQEDYDRLP-EEPSDEERDMLDLAYGLTDT 579
+++E GACEGTL+CSTCH+I ++ +L +EP+DEE DMLDLAYGLTDT
Sbjct: 79 VDLE--GACEGTLSCSTCHLIFDAKEMAKLNLDEPTDEELDMLDLAYGLTDT 128
>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
Length = 1432
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +1
Query: 193 KMFRTVKNL-SCSKFRYLLRFNDLGSNCIDSKRIVPFSTSSLALKDEKVKVCFVLNDGKR 369
++ +T+K+ S SK Y +DL + K ++ + K +V + + + G+R
Sbjct: 1070 QVVKTLKHRQSVSKKYYDSHSHDLPPLQVGDKGYPRMASIKICPKPTRVNIVMIDSKGER 1129
Query: 370 LEAEAKIGDTLLDVVVNNDLNIE 438
E KIGD LL + ++++E
Sbjct: 1130 KEIPGKIGDNLLYLAHRYNISME 1152
>SB_31707| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
Length = 309
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 460 YPHRPRSPQYLDRCSRPRPEVYHRSSPLLPTSSH 359
+P+ PR P+Y RPE H PL P +H
Sbjct: 216 HPYPPRRPEYAHPYPPRRPEYAHPFLPLPPEYAH 249
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = -3
Query: 460 YPHRPRSPQYLDRCSRPRPEVYHRSSPLLPTSSHRL---ARSIL*PFRPLTLDYS 305
+P+ PR P+Y RPE H P P +H PF PL +Y+
Sbjct: 194 HPYPPRRPEYAHLYPPRRPEYPHPYPPRRPEYAHPYPPRRPEYAHPFLPLPPEYA 248
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 583 ATYPLGRMPGPACRVPRRWAPPVIYHN--PPASVSHGKWNRSGYPHRPRSP 437
AT+P R+P P PR PP H PP SH + G PH PR P
Sbjct: 386 ATHP--RVPSPGASHPRV-PPPGAPHPRVPPPGASHQRVRPPGAPH-PRVP 432
>SB_9846| Best HMM Match : DUF605 (HMM E-Value=0.046)
Length = 811
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 380 SASNLFPSFSTKHTLTFSSFNARLLVENGTIRF 282
+A L F T+HT+ FSSF V NG F
Sbjct: 33 TAEKLIEEFETRHTVKFSSFKVDKNVGNGGCPF 65
>SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6)
Length = 339
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 469 RSGYPHRPRSPQYLDRCSRPRPEVYHRSSPLLPTSSHRLARSI 341
R PHRP+SP+ R R + EV+ +P+L + ++ S+
Sbjct: 298 RQSRPHRPKSPERKPR-ERRKSEVFGPKNPILSPNPMIISSSL 339
>SB_13211| Best HMM Match : Extensin_2 (HMM E-Value=0.0053)
Length = 545
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 523 PPVIYHNPPASVSHGKWNRSGYPH 452
PP++ H P +G W R+ PH
Sbjct: 296 PPIVIHQPHIVHPYGSWKRAMIPH 319
>SB_11512| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
Length = 639
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 457 PHRPRSPQYLDRCSRPRPEVYHRSSPLLPTSSHR 356
P R P R +RP+PE H SP P HR
Sbjct: 571 PRSARPPSDSPRPARPQPEPRHLRSPPEPKPRHR 604
>SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 483 MASGTGQGTLTGPVALNI*IVVHDHVQKCITDLRLC 376
+ SG QGT+ GPV N + ++D + +++RLC
Sbjct: 606 VTSGVPQGTVLGPVLFN--LFINDIQESVRSEIRLC 639
>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
Length = 2658
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 457 PHRPRSPQYLDRCSRPRPEVYHRSSPLLPTSSHR 356
P R P R +RP+PE H SP P HR
Sbjct: 2590 PRSARPPSDSPRPARPQPEPRHLRSPPEPKPRHR 2623
>SB_27602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 380 SASNLFPSFSTKHTLTFSSFNARLLVENG 294
+A L F T+HT+ FSSF V NG
Sbjct: 33 TAEKLIEEFETRHTVKFSSFKVDKNVGNG 61
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = -3
Query: 505 NPPASVSHGKWNRSGYPHRPR-----SPQYLDRCSRPRPEVYHRSSPLLPTSSHRLA 350
+PP+S+ +R + HRPR P C RPR +HR S L RL+
Sbjct: 218 SPPSSLQSSSPSRHLHCHRPRLSNHHRPSRHHHCHRPRLSNHHRPSRHLHCHCPRLS 274
>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
Length = 765
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 311 LLVENGTIRFESIQLLPKSLNLNK*RNLEQDKFLTVLNI 195
L+ N RFE +QLLPK L ++ QD+ + +L++
Sbjct: 25 LVPGNDEARFEYLQLLPKILTHTVQHSVHQDECMQLLSL 63
>SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18)
Length = 530
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 486 HMASGTGQGTLTGPVALNI 430
H+ SG QGT+ GPV N+
Sbjct: 134 HVTSGVSQGTVLGPVLFNL 152
>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 460
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 431 FRSLFTTTSRSVSPIFASASNLFPSFSTKHTLTFSSFNARLLVEN 297
F S+ TTTS +SP AS+L S F N L+E+
Sbjct: 276 FGSMGTTTSSEISPAPTGASSLSSSLPQNQQQQFIMQNMESLIES 320
>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
Length = 1099
Score = 23.4 bits (48), Expect(2) = 9.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 523 PPVIYHNPP 497
PP+IYH PP
Sbjct: 304 PPIIYHPPP 312
Score = 23.4 bits (48), Expect(2) = 9.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 523 PPVIYHNPP 497
PP+IYH PP
Sbjct: 463 PPIIYHPPP 471
Score = 23.4 bits (48), Expect(2) = 9.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 523 PPVIYHNPP 497
PP+IYH PP
Sbjct: 679 PPIIYHPPP 687
Score = 22.2 bits (45), Expect(2) = 9.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 520 PVIYHNPPASV 488
P+IYH PP V
Sbjct: 333 PIIYHQPPVVV 343
Score = 22.2 bits (45), Expect(2) = 9.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 520 PVIYHNPPASV 488
P+IYH PP V
Sbjct: 492 PIIYHQPPVIV 502
Score = 22.2 bits (45), Expect(2) = 9.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 520 PVIYHNPPASV 488
P+IYH PP V
Sbjct: 708 PIIYHQPPVVV 718
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,257,668
Number of Sequences: 59808
Number of extensions: 386398
Number of successful extensions: 1179
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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