Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a17f
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   8e-06
SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.32 
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.32 
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.55 
SB_17735| Best HMM Match : PAN (HMM E-Value=0.00083)                   31   0.73 
SB_12484| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_11138| Best HMM Match : Yippee (HMM E-Value=6.1)                    30   1.7  
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.2  
SB_18948| Best HMM Match : ANF_receptor (HMM E-Value=7.2e-17)          29   2.9  
SB_12684| Best HMM Match : ANF_receptor (HMM E-Value=2e-05)            29   2.9  
SB_29285| Best HMM Match : DUF1201 (HMM E-Value=2.4)                   29   3.9  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                28   5.1  
SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)                   28   6.8  
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_57237| Best HMM Match : RRM_1 (HMM E-Value=0.071)                   27   9.0  
SB_3382| Best HMM Match : WD40 (HMM E-Value=2.8e-05)                   27   9.0  
SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)                 27   9.0  

>SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 27/80 (33%), Positives = 45/80 (56%)
 Frame = +3

Query: 222 PLPAIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWKGVVG 401
           P+P  R +E   D++AL+ KEKG W  L+ E++  LY++ F +T  E +      K VVG
Sbjct: 26  PVPIAR-QEFGSDLEALKAKEKGPWTALSKEDRVALYQSQFPKTLQESKLGEPYAKKVVG 84

Query: 402 WALVLSSLAAWIYMAMKVFV 461
              VL SL+   +  ++ ++
Sbjct: 85  GVGVLISLSLAFFAFLRTYM 104


>SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1102

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -2

Query: 303 ICANHPFLFHGEP*CQGCPHGTGWQAGGSQACLRSWAGR*NHSLPTHGHQSWQVQC 136
           IC +  FL      CQ CP GT  +A G  AC+    G+   +  T+      V C
Sbjct: 567 ICVSGKFLNTTTLSCQVCPKGTFQEANGKTACIPCTGGKITLNNATNSSSGCLVAC 622


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +1

Query: 34  SSPILPAKWPII*CAGRSSMLSVF--LSAPGLDPLETLNLPRLVTVSG*AMVSTASPTT* 207
           SSP+LP    ++  +  SS ++     SAP L+   T N          A+ S+ SPTT 
Sbjct: 671 SSPVLPTTTSVLTSSMESSSMATTSTTSAPSLESSMTTNSTTSTLAQAVAISSSVSPTTT 730

Query: 208 TGLTSPCLPSGSVRTPLTLRLSVK 279
           + LTS    S    T  T   S++
Sbjct: 731 SVLTSSMEFSSMATTSTTTTPSLE 754



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +1

Query: 34  SSPILPAKWPII*CAGRSSMLSVFL-SAPGLDPLETLNLPRLVTVSG*AMVSTASPTT*T 210
           SSP+LP    ++  +  SSM +    S P L+   T N          A+ S   PTT +
Sbjct: 519 SSPVLPTTTSVLTSSMESSMATTSTTSTPSLESSMTTNNTTSTLAEAVAISSLVLPTTTS 578

Query: 211 GLTSPCLPSGSVRTPLT 261
            LTS  + S S+ T  T
Sbjct: 579 VLTS-SMESSSMATTST 594



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +1

Query: 34  SSPILPAKWPII*CAGRSSMLSVF--LSAPGLDPLETLNLPRLVTVSG*AMVSTASPTT* 207
           SS +LP    ++  +  SS ++     S P L+   T N   L      A  S   PTT 
Sbjct: 418 SSSVLPTTTSVLTSSMESSSMATTSTTSTPSLESSMTSNNTTLTLAEAVATSSPVLPTTT 477

Query: 208 TGLTSPCLPSGSVRTPLT 261
           + LTS   PS    T  T
Sbjct: 478 SVLTSSMEPSSMATTSTT 495



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +1

Query: 34   SSPILPAKWPII*CAGRSSMLSVF--LSAPGLDPLETLNLPRLVTVSG*AMVSTASPTT* 207
            SSP+LP    ++  +  SS ++     S P L+   T N          A+ S   PTT 
Sbjct: 773  SSPVLPTTTSVLTSSMESSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTTT 832

Query: 208  TGLTSPCLPSGSVRTPLT 261
            + LTS  + S S+ T  T
Sbjct: 833  SVLTS-SMESSSIATTST 849


>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = +3

Query: 219  FPLPAIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAE-FQAPTGEWKGV 395
            FPLP   F        +LR  ++    +L+   ++   RA+  +   E F++P G  KG 
Sbjct: 1034 FPLPVGFFCLVYCLFMSLRGTQRNS-NELSESYRERETRAAVLEVVCEAFRSPAGSSKGA 1092

Query: 396  VGWALVLSSLAAWIYMAMKVFVYSP 470
            V W  VL++   ++++ +  F+ SP
Sbjct: 1093 VYWESVLTA-RRFVFLCLAAFIKSP 1116


>SB_17735| Best HMM Match : PAN (HMM E-Value=0.00083)
          Length = 431

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
 Frame = +3

Query: 174 GYGFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEKG--DWRKLTLEEKKTLYRASFC 347
           GY + G     D  +  LP             +R    G  +W +LT+ E  TLY     
Sbjct: 258 GYNYEGGKALDDEQETKLPTFWATPMKHVCIGMRNSSGGTVEWLQLTVRELTTLYEVFST 317

Query: 348 QTFAEFQAPTGEWKGVVG 401
                   P  +W G+VG
Sbjct: 318 NNHHPTNIPLSKWLGLVG 335


>SB_12484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
 Frame = -3

Query: 140 SVSSGSSPGADRNTDSIDERPAH---QIIGHFAGRIGL-------ELYENHT 15
           +V +  +P  +    +IDE+PAH   Q +GH AG I L       E Y  HT
Sbjct: 7   TVCTKQNPIFEEEMQNIDEKPAHENLQAMGHMAGSISLLNKTAEKEFYPKHT 58


>SB_11138| Best HMM Match : Yippee (HMM E-Value=6.1)
          Length = 336

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 517 ECWTLR*IPSMDLPPSGTTKTTAGSK 594
           +C T+R IPS D+P +G  KT  GS+
Sbjct: 170 QCNTIRGIPSFDMPFNGVLKTGNGSQ 195


>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 294 WRKLTLEEKKTLYRASFCQTFAEFQAPTGEW 386
           WRK +  EKK +     C+T + +  P+G W
Sbjct: 210 WRKASHAEKKVVRACPICRTPSGYVVPSGVW 240


>SB_18948| Best HMM Match : ANF_receptor (HMM E-Value=7.2e-17)
          Length = 335

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = -3

Query: 293 ITLFFFTESLNVRGVLTEPDGRQGEVRPVYVVGLAVETIAYPLTVTNLGKFSVSSGSSPG 114
           +T   F +++ + G LT P  R    +P+   G  V  IA P       +FS SS     
Sbjct: 88  VTWQIFHQAVAIVGPLTSPMVRA--TQPL-CSGFHVPQIA-PYATDPAFEFSPSSYKYLL 143

Query: 113 ADRNTDSIDERPAHQIIGHFA-GRIGL 36
             R++DSI+ R     IGHF   R+GL
Sbjct: 144 RMRSSDSIENRAIADFIGHFNWTRLGL 170


>SB_12684| Best HMM Match : ANF_receptor (HMM E-Value=2e-05)
          Length = 253

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = -3

Query: 293 ITLFFFTESLNVRGVLTEPDGRQGEVRPVYVVGLAVETIAYPLTVTNLGKFSVSSGSSPG 114
           +T   F +++ + G LT P  R    +P+   G  V  IA P       +FS SS     
Sbjct: 88  VTWQIFHQAVAIVGPLTSPMVRA--TQPL-CSGFHVPQIA-PYATDPAFEFSPSSYKYLL 143

Query: 113 ADRNTDSIDERPAHQIIGHFA-GRIGL 36
             R++DSI+ R     IGHF   R+GL
Sbjct: 144 RMRSSDSIENRAIADFIGHFNWTRLGL 170


>SB_29285| Best HMM Match : DUF1201 (HMM E-Value=2.4)
          Length = 332

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 3/156 (1%)
 Frame = +3

Query: 126 STGNTELAKIGDREWVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEKGDWRKL 305
           +TG T+L ++          N +    DRP   L ++    D P   AL        R +
Sbjct: 66  NTGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWDAPCSGALSAAGVVVTRSV 125

Query: 306 TLEEKKTLYRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIYMAMKVFVYSPIPDSL 485
           T        R  FC+ +A    P      VVG  L ++ +A W Y   ++     I DS 
Sbjct: 126 TATLASADVRRCFCR-YA--PPPIASVYLVVGLLLAVAVVAIW-YCHKQIVESRRIRDSG 181

Query: 486 SEE-RQKAQLQRMLDLKVNPIDGLASKW--DYENNR 584
            ++ R++ + +RM D +V  ++    +W   Y  NR
Sbjct: 182 EQQPRRRRRPRRMNDSQVVSVN---QQWFDHYSGNR 214


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 462  TQRLSWPCRSKQPKMRGLEPNQRLPSTLRWGPGTQRRSDR 343
            T   S P +S    M    PN  +PST + GP   RR +R
Sbjct: 1035 TPNTSMPTKSTPTSMPRKTPNTFIPSTPQVGPTPPRRGNR 1074


>SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)
          Length = 341

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 273 REKEKGDWRKLTLEEKKTLYRASFCQT 353
           RE  + D ++  +E+KK + +A+FCQT
Sbjct: 77  REILENDEKRCPIEDKKKVKKATFCQT 103


>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -2

Query: 261 CQGCPHGTGWQAGGSQACLRSWAGR*NHSLPT 166
           C+ CP GT     GS  CLR   G    SLPT
Sbjct: 612 CKPCPSGTFTDVPGSSECLR--CGANTVSLPT 641


>SB_57237| Best HMM Match : RRM_1 (HMM E-Value=0.071)
          Length = 210

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 311 RRKENSVQSFILSDLR*VPGPHRRVEGSRWLGSSPLIFGCLDLHG 445
           R KE  V  ++LSD   V GPH+R++ S W      + G L+  G
Sbjct: 71  RCKEVQVIPWVLSDTNYVRGPHQRLDTS-WTVFVGGLHGMLNAEG 114


>SB_3382| Best HMM Match : WD40 (HMM E-Value=2.8e-05)
          Length = 375

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 95  SIDERPAHQIIGHFAGRIGLELYENHTH 12
           S+DER    +    AG + +E Y NH H
Sbjct: 292 SLDERSLEALAPRVAGSLDMETYLNHRH 319


>SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)
          Length = 330

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -2

Query: 489 HSMSQE*DCTQRLSWPCRSKQPKMRGLEPNQRLPST 382
           HS      C  R   P   K+PK R L P QR  ST
Sbjct: 193 HSHHYRRICRYRQRRPLTPKRPKTRQLPPEQRCKST 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,094,399
Number of Sequences: 59808
Number of extensions: 482941
Number of successful extensions: 1505
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)