Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D10
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43236| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 29   4.4  
SB_50513| Best HMM Match : Lig_chan (HMM E-Value=0.0083)               28   7.6  

>SB_43236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 275 FDHCCLCLQPFDDPYCDADGNVFELQAIID 364
           FD C L LQP  +P    DG +++ +AI++
Sbjct: 43  FDCCSLTLQPCREPVITPDGFLYDKEAILE 72


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +2

Query: 209  TLYGGKRSGTATEEDTTFKRLPFDHCCLCLQPFDDPYCDADGNVFELQA 355
            T+Y   R+ TA  E  T+   PF  CC  +   D    DAD   F+  A
Sbjct: 4527 TVYRTHRNSTAQAERRTWGNKPFSRCCARVS-IDWRKIDADKGEFDSSA 4574


>SB_50513| Best HMM Match : Lig_chan (HMM E-Value=0.0083)
          Length = 417

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +2

Query: 422 LIKLNFFKNAEDAYHCPVLFKPFTKNSHIVAIRTSGNVYSYEAVEQLNIKGKNWXDL 592
           +I  N+F+  +D+  C ++   F K  H+V   T  +  + +  E++   G+ W D+
Sbjct: 32  MIVNNYFQ--QDSSSCSLIVYIFVKIGHLVNNETRASKITMDTEEKIFWNGEYWGDI 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,286,198
Number of Sequences: 59808
Number of extensions: 319950
Number of successful extensions: 787
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)