Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C20
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  48   8e-06
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.34 
SB_30571| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)            27   9.7  

>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 256 IMEKLNSLTFQKITXIVTAVDSQPMFDGGVLINVLGRLKCDEXPPHLYMQTFVLXPLG-- 429
           I EK+  L F      +  VDS      GV++ V G L  +  P   +MQTFVL P    
Sbjct: 60  IYEKIKDLNFVDCRTKILQVDSHSTLGSGVVVQVSGELSNNGQPMRKFMQTFVLAPGEDI 119

Query: 430 XSFYVQHDIFR 462
             +YV +DIFR
Sbjct: 120 RKYYVHNDIFR 130


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 16/39 (41%), Positives = 31/39 (79%)
 Frame = +1

Query: 256 IMEKLNSLTFQKITXIVTAVDSQPMFDGGVLINVLGRLK 372
           I+ KL S+ FQ++  ++T+ D+QP+ +GG+++ V+G+LK
Sbjct: 162 IVAKLVSMPFQQVLHVITSQDAQPLPNGGIIVFVMGQLK 200


>SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 371 FNLPRTLIKTPPSNIGWESTAVTIXVIF*KVKLFNFSIIL 252
           FN  R     PPSN+ W   AV + ++F  VK  N+ + L
Sbjct: 25  FNQNRKKFGAPPSNLVWALYAVFVGILFSVVKFLNYRLHL 64


>SB_30571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = -3

Query: 416 NTNVCMYRCGGXSSHFNLPRTLIKTPPSNIGWESTAVTIXVIF*KVKLFNFSIILTAALQ 237
           NTN  +Y     +++F    TL   PP    + ST  T+ +I      +  +II+T  L 
Sbjct: 14  NTNTIIYTTQQLNNYFTNTNTLDPVPPPPSPF-STLTTVTII---TLGYTSTIIITLCLH 69

Query: 236 LYSLKGH 216
            YS   H
Sbjct: 70  YYSQHHH 76


>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
          Length = 524

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 188 NKICPLSXDHRTMCNIVAQNLYRLHRTAD*APFRLRCVYLSHQQ 57
           +++C L   H+T C        +  RT    P RL C   SHQQ
Sbjct: 247 DRLCALYRHHQTDCAHCTDTTRQTARTVQTPPDRL-CALYSHQQ 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,226,537
Number of Sequences: 59808
Number of extensions: 341122
Number of successful extensions: 504
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)