Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C19
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              168   3e-42
SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)                 30   1.6  
SB_44500| Best HMM Match : DUF1693 (HMM E-Value=4)                     27   8.5  
SB_10988| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  168 bits (409), Expect = 3e-42
 Identities = 80/116 (68%), Positives = 96/116 (82%), Gaps = 2/116 (1%)
 Frame = +3

Query: 99  VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGT--TQG 272
           VH+KNT+E AMAI+ M +R+A RYLK+V  KK+ +PFR++NGGVGR AQAK      +QG
Sbjct: 24  VHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPFRKYNGGVGRKAQAKNLKVPGSQG 83

Query: 273 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRIN 440
           RWPKKSAE LLQLL+NAESNA+ K LDVD LV++HIQVN AP +RRRTYRAHGRIN
Sbjct: 84  RWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVNEAPSMRRRTYRAHGRIN 139



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +2

Query: 29 MGRYSREPDNPAKSCKARGSNLR 97
          M RY+ +P+NP KSCKARGSNLR
Sbjct: 1  MTRYATDPENPTKSCKARGSNLR 23


>SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)
          Length = 471

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +3

Query: 246 AKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 425
           AKQ    +G WP     FL+  + N     D  +      +   IQ N+  C++++ Y+A
Sbjct: 202 AKQTCVVEGAWPLVENHFLIVQVTNVPL-VDGSSATATNKITVIIQENKDSCVQQKIYKA 260


>SB_44500| Best HMM Match : DUF1693 (HMM E-Value=4)
          Length = 553

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 245 LSTATNAAVEATEWNTLFLFNHVFEVTNSTTERHLSDC-HCGLICVLKVNSGGLNHALC 72
           L+T+   +V+    N   L N+ F  TN ++   +  C H GL   L  NS GL+ A C
Sbjct: 53  LNTSFGESVKLISRNPA-LENNTFRYTNISSGLPVVRCLHYGLRMGLSTNSNGLSIAYC 110


>SB_10988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -2

Query: 233 TNAAVEATEWNTLFLFNHVFEVTNSTTERHLSDCHCGLICVLKVNSGGLNHALCMISQGY 54
           +N+ +E +  +TL + N   EV+NST E  L    C ++    +    L H +    + Y
Sbjct: 121 SNSTLEVSS-STLEVSNSTLEVSNSTLEDELFQSRCVVLVYSDICEDYLQHDIHEFQKSY 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,438,341
Number of Sequences: 59808
Number of extensions: 355263
Number of successful extensions: 931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)