Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D17
         (872 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)             194   6e-50
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)              29   5.0  
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)                   28   8.7  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       28   8.7  
SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)                     28   8.7  
SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)                      28   8.7  
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     28   8.7  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score =  194 bits (474), Expect = 6e-50
 Identities = 90/106 (84%), Positives = 100/106 (94%)
 Frame = +2

Query: 179 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 358
           MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT DWKGLKITV
Sbjct: 1   MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITV 60

Query: 359 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISL 496
            LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L
Sbjct: 61  CLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITL 106



 Score = 88.6 bits (210), Expect = 6e-18
 Identities = 40/59 (67%), Positives = 49/59 (83%)
 Frame = +3

Query: 495 LXDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 671
           L DV  +AK+MR RSMAR+LSG+VKEILGT QSVGCTV+G  PHD+ID INSG + I++
Sbjct: 106 LDDVTNVAKVMRPRSMARHLSGTVKEILGTCQSVGCTVDGMAPHDVIDKINSGEIEIED 164


>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
          Length = 302

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 347 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 478
           ++ ++     RQ +   +PSA    IR  +E PR  +K  N+KH
Sbjct: 97  RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140


>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 1333

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 488  ISLXRCNRHCEDHEKQINGP----VPFWLSKRDSWHSTVSWMYCGGQA 619
            I   RC RH + H  +IN      + +W    +SW+   SW+Y G +A
Sbjct: 978  IDQLRCFRH-DRHPIRINNETRRDLVWWQQFLESWNGVSSWLYPGLEA 1024


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 507 IGIAKIMRNRSMARYLSGS-VKEILGTAQSVGCTVEGRPP 623
           +G  K++++R       G  V+ + GT  S+ C VEG PP
Sbjct: 128 VGTHKLLKSRDPVIVTIGDKVETLTGTEVSIICPVEGLPP 167


>SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)
          Length = 671

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +2

Query: 251 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 421
           T  L P ++ PLGL PKK+  D  ++   S  KGL +   +++++   + A +  A + I
Sbjct: 369 TPPLVPFRVSPLGLVPKKLPGDFRLSHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 428


>SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)
          Length = 193

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 582 TAQSVGCTVEGRPPHDLIDDINSG 653
           T   + C VE  PPH++ D +N G
Sbjct: 150 TLNQLYCPVEPNPPHNMFDHVNLG 173


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -2

Query: 454 TVTRRLLKGSDDKGCC-----RGNNSYLGLSVLNCQLHSDLETLPVTCGLGNVITH 302
           +++  +  GSD+K CC      G  + LG+  +   +HSD++  P+   L  +  H
Sbjct: 108 SLSSSMFTGSDNKLCCFFLGQDGEKAMLGIVYVLTHVHSDIQFCPLLPVLAALFLH 163


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +2

Query: 239  EVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAVVPS 406
            E+G T +    +  LG  PK V +D     +DW    +       +    IA+ PS
Sbjct: 1793 ELGITDAEGNYVDSLGADPKAVSNDYVGYATDWVNNNLPENAITNSTWTGIALGPS 1848


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,198,846
Number of Sequences: 59808
Number of extensions: 443119
Number of successful extensions: 1052
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)