Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D04
         (890 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7)                    32   0.54 
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                32   0.54 
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  

>SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7)
          Length = 203

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 20/40 (50%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 773 CXNESANXRGXAVXYWALFXXP--LXDSLRSVVGCGXRYQ 886
           C NESAN RG AV        P  L    RS  GCG RYQ
Sbjct: 100 CINESANARGEAVCVLGALPLPRSLTRCARS-FGCGERYQ 138


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 20/40 (50%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 773 CXNESANXRGXAVXYWALFXXP--LXDSLRSVVGCGXRYQ 886
           C NESAN RG AV        P  L    RS  GCG RYQ
Sbjct: 464 CINESANARGEAVCVLGALPLPRSLTRCARS-FGCGERYQ 502


>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 838 RXTEKRPIRNRLSPGVGRFIXAEKTSHTSPLNLKHKMNAIVVVN 707
           R +EK  + + L    G F+  E      PL L H +  +VVVN
Sbjct: 10  RRSEKEEVNDHLGQLHGGFLRQEAGERLGPLVLNHSVTVLVVVN 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,456,068
Number of Sequences: 59808
Number of extensions: 304223
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)