Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C22
         (890 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               130   2e-30
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)                  29   3.8  
SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   5.1  
SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            28   8.8  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  130 bits (313), Expect = 2e-30
 Identities = 64/89 (71%), Positives = 72/89 (80%)
 Frame = +2

Query: 140 ARPLXVGVFREERDGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 319
           ARP+ + VF E  + AG    P+  VFKAPIRPDLVN VH +++KN RQPY V+K AGHQ
Sbjct: 2   ARPV-ITVFNENGESAGQTTLPA--VFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQ 58

Query: 320 TSAESWGTGRAVARIPRVRGGGTHRSGQG 406
           TSAESWGTGRAVARIPRVRGGGTHRSGQG
Sbjct: 59  TSAESWGTGRAVARIPRVRGGGTHRSGQG 87



 Score =  122 bits (295), Expect = 3e-28
 Identities = 60/137 (43%), Positives = 76/137 (55%)
 Frame = +3

Query: 408 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 587
           AFGNMCRGGRMFAPTK WR+WH                          ARGH IEKI E+
Sbjct: 88  AFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHRIEKIAEV 147

Query: 588 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKGVQVSASSCW*G*NAQPSSYQRKGPLII 767
           PLV++D ++ + KT  AV  L+ + A+ D+ K +         G      +  RKGPLII
Sbjct: 148 PLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLII 207

Query: 768 FNKDQGLTRAFRXIPGV 818
           +N DQGL +AFR +PGV
Sbjct: 208 YNNDQGLRQAFRNLPGV 224


>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
          Length = 532

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 268 VQELEAALLREQGGWSPNQCRIMGYRTCCRPNSSCPWWW 384
           + E  A L+   G   P++  I+ +R CCR N  C W+W
Sbjct: 221 ITEAAAVLIVVNGTGVPDRL-IVSFRGCCRVN--CNWYW 256


>SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1820

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 512 CQGRSPLSEVDATVPAPPGLRGGEHTSTTT 423
           C GR+P++  + TV  P GL+ GE  +  T
Sbjct: 832 CTGRNPINVSEKTVTLPFGLKAGEVVAKVT 861


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 239  DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 364
            D+ NDV ++++  +  PY +     H T  E   TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075


>SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 721 YPYQHEDAETCTPLR-ISDHALRRL 650
           +P+ HED   C P R  SDH  +RL
Sbjct: 425 FPWAHEDLPICLPSRGASDHVWKRL 449


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 233 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 355
           RP       +SM K  R+PY  + +E GH+    S  T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,550,618
Number of Sequences: 59808
Number of extensions: 568169
Number of successful extensions: 1496
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)