Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A06
         (916 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)                   29   5.2  
SB_3323| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_20641| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)        28   9.2  
SB_56887| Best HMM Match : TolA (HMM E-Value=0.66)                     28   9.2  

>SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)
          Length = 1003

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 452 HSMSQDQGKIQHQVDEEALSNEDVEPAPVYDFRAIEETA 568
           HS+S+  G++Q++  E       +EP+     RA E  A
Sbjct: 880 HSISEPSGRVQYRATESKAEQSSLEPSSGVQSRATESRA 918


>SB_3323| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 872

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
 Frame = +2

Query: 179  QEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDG 358
            QEK  +++    +R    +TR    A   +   + GS ++K    K +I +TN  +    
Sbjct: 658  QEKMIQDMEKAVVRREVIITRGDAQAKMGRVANTKGSFQKKLVDMKKKIKQTNNDANACD 717

Query: 359  CLLLERTTLSGIPLIQD-DNDQGWRPDAYSSEHSMSQDQGKIQHQVDEEALSNEDVE 526
                   T  GIP I D +  QG R         + ++Q  +  +++E+ ++ + ++
Sbjct: 718  AGTSRGHTNEGIPSIFDLEYTQGAR--IKEEIQGLRENQVHVSQELEEKQVTCQQLQ 772


>SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 535 GCWFNILIGKGLFINLVLNFSLVLTHGVLTGICIRSPSLV 416
           G    +L+G  +  +LVL   L +T GV+T   + SP+L+
Sbjct: 651 GTGVGVLVGVPVVASLVLGAGLTITAGVVTAGVLGSPALL 690


>SB_20641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 25/89 (28%), Positives = 34/89 (38%)
 Frame = +2

Query: 203 PTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDGCLLLERTT 382
           PT AL PR  L  K    +           KR+ A+    +P    H    G   L R +
Sbjct: 29  PTNALEPRGELLSKRARHV-----------KRRDAITCTSLPLLLFHLASRGFDFLSRIS 77

Query: 383 LSGIPLIQDDNDQGWRPDAYSSEHSMSQD 469
              + +I DDN  G+  D  SS  +   D
Sbjct: 78  DDDVVIIGDDNYFGYGSDDDSSVFADDSD 106


>SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 9/150 (6%)
 Frame = +2

Query: 209  RALRPRSTLTRKTTNALSSQSVGSG-GSAKRKTALNKNQIPKTNVHSGGDGCLLLERTTL 385
            +A+ P +      T A+SS +   G  S +  T+ N+    +T   +G    +  ++   
Sbjct: 619  QAMNPNNAPRFTQTTAVSSNTSSYGENSGETGTSTNQGLTGQTQSSAGSKSLVTRKKPQS 678

Query: 386  SGIPLIQDDNDQGWRPDAYSSE------HSMSQDQGKIQHQVDEEALSNEDVEPAPVYDF 547
                LIQ  N      D Y+ E        +  +    +   D+ +++N    P PV + 
Sbjct: 679  LLEQLIQMPNTSS-NSDEYNDELIFDIFEELLNEGDSRRTCQDKSSIANS--LPVPVQEI 735

Query: 548  R--AIEETAPRDKCLYSSFFEPPLHQSAEE 631
            +   +  TAP     +S  F  P HQ++ +
Sbjct: 736  KQEVVTPTAPEPSVSFSKCFNIPQHQNSRQ 765


>SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)
          Length = 310

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 75  NTIAYCRQDVTNSRRTETRRIGW 143
           N IA+  +DVT+  R   R++GW
Sbjct: 120 NMIAFVSEDVTSQTREALRKVGW 142


>SB_56887| Best HMM Match : TolA (HMM E-Value=0.66)
          Length = 404

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 407 DDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEEALSNEDVEPAPV 538
           DD+D+    D Y  +    +D+GK +   + E +  +  EP  V
Sbjct: 255 DDDDEKKDKDEYKDDFESEKDEGKEKEPAEAEEVIEDATEPKEV 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,676,843
Number of Sequences: 59808
Number of extensions: 485614
Number of successful extensions: 1350
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)