Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D17
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               176   1e-44
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                80   2e-15
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                55   4e-08
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)                  31   1.1  
SB_2865| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         30   1.9  
SB_4898| Best HMM Match : CaMBD (HMM E-Value=1.2)                      29   4.3  
SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)                 29   4.3  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)                   29   4.3  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_4039| Best HMM Match : Herpes_US9 (HMM E-Value=6.1)                 28   7.6  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  176 bits (428), Expect = 1e-44
 Identities = 76/130 (58%), Positives = 99/130 (76%)
 Frame = +1

Query: 127 EKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDL 306
           E  P  ++G ++GL  G HGFH+H +GDNTNGC SAG HFNP K++HGGPS   RHVGDL
Sbjct: 24  EGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDL 83

Query: 307 GNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGR 486
           GN+ A  D G   + + D+ ++L G +S++GR++VVHAD DDLG GGHE SKTTG+AGGR
Sbjct: 84  GNVVA-GDDGKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGR 142

Query: 487 IACGVIGLAK 516
           +ACGVIG+ +
Sbjct: 143 LACGVIGITQ 152


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 39/71 (54%), Positives = 49/71 (69%)
 Frame = +1

Query: 292 HVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTG 471
           HVGDLGNI A ++   T    +D  + +     IIGR +VVHAD DDLG GGHELSK+TG
Sbjct: 1   HVGDLGNIIANQNGRAT-FRFEDKTVKVW---DIIGRAIVVHADEDDLGRGGHELSKSTG 56

Query: 472 NAGGRIACGVI 504
           N+G R+ CG+I
Sbjct: 57  NSGARVGCGII 67


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 28/49 (57%), Positives = 34/49 (69%)
 Frame = +1

Query: 265 HGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLV 411
           HG P    RH+GDLGNIEA + +G+  VSI D  +SL G  SIIGR+LV
Sbjct: 2   HGAPEDKDRHLGDLGNIEA-DANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
          Length = 710

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/93 (25%), Positives = 43/93 (46%)
 Frame = +1

Query: 181 HGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQD 360
           H  H++    + + C +  +  +  +  HGG  S++     +GN  +    G    S+ D
Sbjct: 309 HDNHLNPSSYDNHSCLANQSSLSDNQSSHGGNHSSL-----VGNQSS---HGGNHSSLDD 360

Query: 361 SQISLHGPNSIIGRTLVVHADPDDLGLGGHELS 459
           +Q SL G  SI+G     H + +  GLG ++ S
Sbjct: 361 NQSSLGGNQSILGDNQSSHGN-EKSGLGDNQSS 392


>SB_2865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 28/104 (26%), Positives = 52/104 (50%)
 Frame = +2

Query: 182 TVSMCTNLVTTQMVAHQLELISTLKNKIMVVPVLLYAMSATSVTLRQLKTLESLKYQSKI 361
           TV M T L+T  MV   + ++  L   +MV  V +  ++   VTL  + T++ +      
Sbjct: 27  TVMMVT-LITVMMVTLVMVIMVKLVTVMMVTLVTVVMVTVMMVTLVMVITVKLVTVMMVT 85

Query: 362 LRSLFMDLTASLVAL*LSMLTLMTWDSVAMS*VRPLVMLVAVLL 493
           L ++ M     +  + + M+TL+T   V +  V+ +V LV V++
Sbjct: 86  LVTVVMVTVMMVTLVTVMMVTLVTVMMVTLVTVK-MVTLVMVMI 128


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
 Frame = +1

Query: 67  KAVCVLRGDVSGTVFFDQQDEKSP----VVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 234
           KA   + G + GTV F Q    +     + ++G  + L+   H   V   G+    C + 
Sbjct: 58  KATFSMSG-IRGTVTFTQSSPNTSTNIKLALTGVNETLSWQIHDLPVIYKGNAATTCNTV 116

Query: 235 --GAHFNPEKQDHGGPSSAVRH---VGDL-GNIEAIEDSGVTKVSIQDSQISLHGPNSII 396
             G  ++P+       S+A +    VGDL G    I+ + ++ V   DS + L G + I 
Sbjct: 117 ALGNLYDPDGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGIF 175

Query: 397 GRTLVV 414
           GRTLV+
Sbjct: 176 GRTLVL 181


>SB_4898| Best HMM Match : CaMBD (HMM E-Value=1.2)
          Length = 259

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +2

Query: 173 RVNTVSMCTNLVTTQMVAHQ-LELISTLK-NKIMVVPVLLYAMSATSVTLRQLKTLESLK 346
           R+   S     + T+++ HQ + L + LK    +V+P LLY     ++  R +K LE  +
Sbjct: 125 RIQKASHALGKLRTKVLQHQDIHLSTKLKVYNAVVLPSLLYGCETWTLYCRHIKKLE--R 182

Query: 347 YQSKILRSL 373
           + ++ LR++
Sbjct: 183 FHTRSLRAI 191


>SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
          Length = 401

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +2

Query: 173 RVNTVSMCTNLVTTQMVAHQ-LELISTLK-NKIMVVPVLLYAMSATSVTLRQLKTLESLK 346
           R+   S     + T+++ HQ + L + LK    +V+P LLY     ++  R +K LE   
Sbjct: 180 RIQKASHALGKLRTKVLQHQDIRLSTKLKVYNAIVLPSLLYGCETWTLYRRHIKKLEQFH 239

Query: 347 YQS--KILRSLFMDLTASLVAL 406
            +S   I+R  + D   +L  L
Sbjct: 240 TRSLRAIMRIRWQDRITNLEVL 261


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +2

Query: 173  RVNTVSMCTNLVTTQMVAHQ-LELISTLK-NKIMVVPVLLYAMSATSVTLRQLKTLESLK 346
            R+   S     + T+++ HQ + L + LK    +V+P LLY     ++  R +K LE  +
Sbjct: 3174 RIQKASHALGKLRTKVLQHQDIRLSTKLKVYNAIVLPSLLYGCETWTLYCRHIKKLE--R 3231

Query: 347  YQSKILRSL 373
            + ++ LR++
Sbjct: 3232 FHTRSLRAI 3240


>SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)
          Length = 1195

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +2

Query: 173  RVNTVSMCTNLVTTQMVAHQ-LELISTLK-NKIMVVPVLLYAMSATSVTLRQLKTLESLK 346
            R+   S     + T+++ HQ + L + LK    +V+P LLY     ++  R +K LE  +
Sbjct: 944  RIQKASHALGKLRTKVLQHQDIRLSTKLKVYNAIVLPSLLYGCETWTLYCRHIKKLE--R 1001

Query: 347  YQSKILRSL 373
            + ++ LR++
Sbjct: 1002 FHTRSLRAI 1010


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 214  TNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIED 330
            T+  +SA  HF+    DH  P S V    D+  +E+  +
Sbjct: 3205 TSASSSAKVHFSNAASDHDEPQSPVNAFHDMKTLESFSE 3243


>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1604

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 91  DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHG--FHVHEFGDNTN 219
           DVSG+V  +Q   +S   V+  V G     HG  F +H    NT+
Sbjct: 44  DVSGSVTLEQSQSRSGPYVTVAVDGTRVVLHGAVFTIHNLTSNTD 88


>SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +2

Query: 173 RVNTVSMCTNLVTTQMVAHQ-LELISTLK-NKIMVVPVLLYAMSATSVTLRQLKTLESLK 346
           R+   S     + T+++ HQ + L + LK    +V+P LLY     ++  R +K LE  +
Sbjct: 576 RIQKASHALGKLRTKVLQHQDIRLSTKLKVYNAIVLPSLLYGCETWTLYRRHIKKLE--Q 633

Query: 347 YQSKILRSL 373
           + ++ LR++
Sbjct: 634 FHTRSLRAI 642


>SB_4039| Best HMM Match : Herpes_US9 (HMM E-Value=6.1)
          Length = 337

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 200 NLVTTQMVAHQLE-LISTLKNKIMVVPVLLYAMSATSVTLRQLKTLESLKYQSKILRSLF 376
           N  T+Q++   L  L +T  ++I+  P+L  A +ATS  LR   T  +    S+ILR+  
Sbjct: 173 NTATSQILRTPLTCLANTATSQILRTPLLCMANTATSQILRTPLTCLANTATSQILRTAL 232

Query: 377 M 379
           +
Sbjct: 233 L 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,597,302
Number of Sequences: 59808
Number of extensions: 412905
Number of successful extensions: 967
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)