Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D11
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52581| Best HMM Match : Synuclein (HMM E-Value=3.7)                 32   0.35 
SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)             32   0.46 
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)        27   9.9  

>SB_52581| Best HMM Match : Synuclein (HMM E-Value=3.7)
          Length = 198

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -2

Query: 600 VQRG-ERAGRRVLEG-QALEDGDVEGSESVRQRVGSDAAPSKRHVEDARAAVERRHPRTA 427
           V RG ER  RRV  G +  +   V G+E  ++ V   A   KRHV+      +RR  R A
Sbjct: 114 VDRGAERCKRRVDRGAEQCKRHVVRGAEQCKRHVDRGAEQCKRHVDRGSEQCKRRVDRGA 173

Query: 426 QR 421
           +R
Sbjct: 174 ER 175



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 600 VQRG-ERAGRRVLEG-QALEDGDVEGSESVRQRVGSDAAPSKRHVEDARAAVERRHPRTA 427
           V RG ER  R V  G +  +   V G+E  ++ V   A   KRHV+      +R   R A
Sbjct: 37  VDRGAERCKRHVDRGAERCKRHVVRGAEQCKRHVDRGAERCKRHVDRGAERCKRHVDRGA 96

Query: 426 QR 421
           +R
Sbjct: 97  ER 98


>SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)
          Length = 1480

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 18/75 (24%), Positives = 38/75 (50%)
 Frame = -2

Query: 525 ESVRQRVGSDAAPSKRHVEDARAAVERRHPRTAQRHALGTLQLHILSLREVYH*VLTVHS 346
           ES+++ V      SK  V+     VER  P+  ++  +G L+ H +  +E Y     + +
Sbjct: 132 ESIKRIVNRRVGSSKDKVDRIFERVERFAPKEQKKALVGYLKTHRIDGQEGYDPKTFIDN 191

Query: 345 EEELIVEMVSRDAVP 301
            ++ ++E+++R   P
Sbjct: 192 IKQKVLELINRQKKP 206


>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
          Length = 1188

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 494 LHLRSVTLRTRA--PPSNDGIPAPPSATP 414
           L  R  ++RT A  P S++G PAPP  TP
Sbjct: 161 LDAREASMRTTAGLPGSSEGDPAPPVFTP 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,594,921
Number of Sequences: 59808
Number of extensions: 209234
Number of successful extensions: 933
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)