Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_D10
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20433| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_7109| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0029) 28 7.0
SB_43635| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08) 28 7.0
SB_15630| Best HMM Match : p450 (HMM E-Value=0) 28 7.0
SB_49443| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_51944| Best HMM Match : LRR_1 (HMM E-Value=7.7e-34) 28 9.2
SB_23798| Best HMM Match : DAP_C (HMM E-Value=2) 28 9.2
SB_17720| Best HMM Match : Atracotoxin (HMM E-Value=3.2) 28 9.2
>SB_20433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 352 LDPCVAIYKLNLVKVKFAVLVMKNPPMYF 438
LD VA+Y NLV LVM +PP++F
Sbjct: 59 LDSLVAMYCRNLVDKDMGTLVMSSPPVHF 87
>SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 447 YKDLSDVTPFLSNT-FNLAAYVNHSKTLQNLIDLNVNISKFEKK 575
Y + DV+ L +T +LAAY H+K ++ L+ L N K E K
Sbjct: 666 YVNSLDVSDILGDTPLHLAAYFGHTKAVETLLKLGAN-PKMEDK 708
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 420 KPTNVLQRTYKDLSDV--TPFLSNTFNLAAYVNHSKTLQNLIDLNVNISKFEKKPYIIEK 593
KP+ L D ++ TP +T + KT Q L D+N++ +K E++ E
Sbjct: 3940 KPSTSLSTDLADTLELNTTPATVDTLSSITSQTKKKTPQRLDDINIDENKQERQKQTAES 3999
Query: 594 LLKLDFEKN 620
L + + +K+
Sbjct: 4000 LSRTESDKS 4008
>SB_7109| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0029)
Length = 232
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 618 NMKSHIVFLSDYVNMEQMGEFFTKNPMIFCEHLE 719
N K H+VFL++ N+ + T +P FC+ E
Sbjct: 42 NCKGHVVFLAETYNLSIEKDDQTIHPSKFCQRFE 75
>SB_43635| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)
Length = 237
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 292 GKWPFANYL*EF*KFRMLFLLDPCVAIYKLNLVKVKFAVLVMK 420
GKWPF++++ + F +LFL+ + + L + F V+ K
Sbjct: 89 GKWPFSDFVCQSYGFCILFLVSASLLLMALTAINRYFQVVRTK 131
>SB_15630| Best HMM Match : p450 (HMM E-Value=0)
Length = 965
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 2 GRPMLHFVRCSLHLLFSVRKISLXHRXIXI 91
G +++ RC+ LL +VRK+ + HR I
Sbjct: 699 GAQKVYYARCAKALLLTVRKVFITHRAQSI 728
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 2 GRPMLHFVRCSLHLLFSVRKISLXHR 79
G L++ RC+ LL +VRK S+ HR
Sbjct: 806 GAQRLYYSRCTKALLLTVRKGSITHR 831
>SB_49443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 27.9 bits (59), Expect = 9.2
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = +3
Query: 453 DLSDVTPFLSNTFNLAAYVNHSKT-----LQNLIDLNVNISKFEKKPYIIEKL-LKLDFE 614
DLS V +S F +AA +H K + DL +N+ K I + + L D
Sbjct: 4 DLSSVFRLVSKKFRIAALNSHQKEAIEEFTKGEADLFINLPTGYGKSLIYQAMPLVFDDI 63
Query: 615 KNMKSH-IVFLSDYVNMEQMGEFFTKNPMIFCE 710
+ H +V +S V + FTK+ FCE
Sbjct: 64 RRKSGHVVVVVSSCVFNGRPRGLFTKHRCKFCE 96
>SB_51944| Best HMM Match : LRR_1 (HMM E-Value=7.7e-34)
Length = 409
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 492 NLAAYVNHSKTLQNLIDLNVNISKFEKKPY---IIEKLLKLDFEKN 620
N+ + + + L+NL++LN+N + ++ PY +++ L L F N
Sbjct: 253 NITSLSDEIRLLRNLVELNLNKNNIQELPYDFHLLKNLKTLFFSAN 298
>SB_23798| Best HMM Match : DAP_C (HMM E-Value=2)
Length = 344
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 2 GRPMLHFVRCSLHLLFSVRKISLXHR 79
G L++ RC+ LL +VRK S+ HR
Sbjct: 82 GAQRLYYSRCTKALLLTVRKGSITHR 107
>SB_17720| Best HMM Match : Atracotoxin (HMM E-Value=3.2)
Length = 389
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 397 KFAVLVMKNPPMYFNEHIKIYLM 465
+F+ L + +PPMY++E K YL+
Sbjct: 350 EFSSLGLTDPPMYYDEQYKCYLI 372
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,108,120
Number of Sequences: 59808
Number of extensions: 346296
Number of successful extensions: 870
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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