Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C17
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               315   3e-86
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         244   4e-65
SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  315 bits (773), Expect = 3e-86
 Identities = 143/233 (61%), Positives = 170/233 (72%), Gaps = 1/233 (0%)
 Frame = +2

Query: 38  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 217
           F+ P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE ++PGS
Sbjct: 5   FEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEKPGS 64

Query: 218 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 397
           K+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKNW   
Sbjct: 65  KLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNWCNS 124

Query: 398 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 577
                      W D+ G+KSIE+DF  M +YC V+RVI HTQ KLLK RQKKAHIMEIQ+
Sbjct: 125 KKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLKMRQKKAHIMEIQV 184

Query: 578 NGG-TIEDKVKWAXEHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHT 733
           NGG  + +KV W  E LE P PV  VF+ DEMID I             RW T
Sbjct: 185 NGGKDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGT 237


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  244 bits (598), Expect = 4e-65
 Identities = 106/169 (62%), Positives = 129/169 (76%)
 Frame = +2

Query: 17  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 196
           P      F+ P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++R
Sbjct: 46  PKMSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILR 105

Query: 197 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 376
           E ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRF
Sbjct: 106 EVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRF 165

Query: 377 YKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 523
           YKNW              W D+ G+KSIE+DF  M +YC V+RVI HTQ
Sbjct: 166 YKNWCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQ 214



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 10  LSSSMSHRKFSAPRSWVYGILSQK 81
           L   MSHRKF APR    G L +K
Sbjct: 44  LEPKMSHRKFEAPRHGSLGFLPRK 67


>SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 17  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 145
           P C T+  QHP   S+ F  KK +  ++G  K++ K  P+KPV
Sbjct: 191 PVCDTDGQQHPNLCSLHFQGKKLA--YKGFCKSYCK-SPTKPV 230


>SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 89  RRHRGKVKAFPKDDPSKPVHL 151
           R HR  + AFP D P+ PV L
Sbjct: 7   RAHRSSLHAFPPDGPAHPVSL 27


>SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 263 TPPMVCVGVVGYIETPHGLRAL-LTVWAEHMSEDCRRRFY 379
           TP  +C+G  GY+ T   L+ L LTV    M E  + +++
Sbjct: 301 TPGRLCIGSYGYVATQQFLQLLRLTVLPPVMIEKAKNQYH 340


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 89  RRHRGKVKAFPKDDPSKPVHL 151
           R HR  + AFP D P+ PV L
Sbjct: 15  RAHRSSLHAFPPDGPAHPVSL 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,088,801
Number of Sequences: 59808
Number of extensions: 520656
Number of successful extensions: 1096
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)