Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C10
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.013
SB_48008| Best HMM Match : M (HMM E-Value=0.0068)                      31   0.67 
SB_10911| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_58622| Best HMM Match : GCV_T (HMM E-Value=6e-17)                   28   6.2  
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              28   6.2  
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)         28   8.3  

>SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 486 VHIGYTDFSEEEVRRLVAELG-KQFRGDRYHLMNNNCNHFTSAFCMALCSRDIPPWVNRL 662
           +++G T  +E+     V  L    FR ++YHL  +NCN F++   M L  + IP  +  L
Sbjct: 1   MNLGVTHVTEDLFMEYVHGLSCDAFRPEKYHLFEHNCNTFSNEIAMFLTGQKIPRHIQDL 60


>SB_48008| Best HMM Match : M (HMM E-Value=0.0068)
          Length = 1068

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 416  HRGLRDIAARRTGTRGAVSIQAECTYRIYRFQRGGSKKISRRTRE 550
            HR L ++ A     +GA  + AE   R  RF+RG ++ ++RR R+
Sbjct: 1014 HRNLEELIATLKDGKGAAKLDAELRER--RFRRGRAEAMTRRLRQ 1056


>SB_10911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 525 RRLVAELGKQFRGDRYHLMNNNCNHFTSAFCMALCSRDIP-PWVNRLXYVSSCVPF 689
           RR++ ELG    GD    + + C H + A  + L  RD   P V +L  +++  PF
Sbjct: 13  RRILYELGVPLPGDNGDPLESTCRHASLALAVVLQRRDWENPGVTQLNRLAAHPPF 68


>SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +2

Query: 365 CSSSRIGMGVRGSSVRVHRG----LRDIAARRTGTRGAVS 472
           C ++R+G  +RG+  R        L DIAAR TG+R  V+
Sbjct: 62  CGANRVGQRMRGTERRAREWFALVLSDIAARDTGSRDWVA 101


>SB_58622| Best HMM Match : GCV_T (HMM E-Value=6e-17)
          Length = 515

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +3

Query: 324 WYTAGAGLGVFHS-GVQVHGSEWAYGGHP 407
           W   G G G+ HS G+  + S+W   G P
Sbjct: 143 WVAIGTGYGIIHSGGIGKYLSDWIIDGEP 171


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -2

Query: 288 RSPVRAEGAGSLNGAIAATCKTGTWRKYRTIRLFGFFDV*ANSVYINRPRHNVA 127
           ++PVR +  G     IAA+    T +   T+ L GF    A S Y++R RH +A
Sbjct: 125 QTPVRIKQTGKRIENIAASRSNKTMQLL-TLLLLGFASFAAASNYVHRCRHTLA 177


>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +2

Query: 257 LPAPSARTGDRGPQRLRYVLDELVHCGRGSGCVPQRCSSSRIGMGVRGSSVRVHRGLRDI 436
           L  P  +TG RGPQ LR         G+     P+    +R   G RG + R   GLR +
Sbjct: 179 LTGPQGKTGARGPQGLRGYRG---FTGKPGLTGPRGLKGARGATGPRGYTGRT--GLRGV 233

Query: 437 AAR--RTGTRG 463
             +  R GT G
Sbjct: 234 PGKSGRNGTPG 244


>SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)
          Length = 916

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = +3

Query: 363 GVQVHGSE--WAY---GGHPYAFTGVFEISPRDERELGEQ 467
           GVQ +GS   W Y   G H Y  TGV+E      +E G Q
Sbjct: 179 GVQEYGSTGVWGYRSMGVHEYGSTGVWEYRSMGVQECGSQ 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,395,546
Number of Sequences: 59808
Number of extensions: 506848
Number of successful extensions: 1290
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)