Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C04
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)                   29   2.3  
SB_5144| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_3182| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)                  27   9.2  
SB_36189| Best HMM Match : ANATO (HMM E-Value=2.9)                     27   9.2  
SB_4978| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 526 DLAIFLFTLHRLD--GDGSEEHRKARTLHTFLSRLKT 422
           D+ +F F LH +D  GD  EE+  A      LSRLKT
Sbjct: 414 DVIVFNFGLHDIDCSGDMPEEYTSAENYSKNLSRLKT 450


>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
          Length = 801

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 533 PRRPRNFPLYTSSPRRRWERRA 468
           PR PR  P++ S PRR W R A
Sbjct: 167 PRLPRLGPVWASGPRRGWSRGA 188


>SB_5144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1015

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 527 RPRNFPLYTSSPRRRWERRASKSADTTHVFEPIEDSASLTRVLAQT 390
           RPRN   Y   P ++W  +  +      +FEP+ +   +T   AQT
Sbjct: 240 RPRNVAYYLQQPLKKWLDQGVEQG----IFEPVAEGDPITCCSAQT 281


>SB_3182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = -2

Query: 614 RDCSYPSR---RGRRWSCLLTAR*VSCARGPRRPRNF-PLYTSSPRRRWERRASKSADTT 447
           R C YP R   R   ++ L+T   +    G R+   F P +   P+R W R A   AD  
Sbjct: 727 RLCPYPRRLETRENNFNSLVTQ--IRIKAGTRKNPQFEPGFEPGPQRPWYRAAKFDADPD 784

Query: 446 H 444
           H
Sbjct: 785 H 785


>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
          Length = 227

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 545 CARGPRRPRNFPLYTSSPRRRWERRASKSADTTH 444
           C+R  +R ++ PL    PR++   RAS + +T+H
Sbjct: 134 CSRPGKRLKHSPLSLEKPRKQAAFRASINTNTSH 167


>SB_36189| Best HMM Match : ANATO (HMM E-Value=2.9)
          Length = 199

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 320 RSVGWRLNSPVTLLLCY--GDPTPQCESPH 237
           R V WRL   V +L CY  G+  P CE  H
Sbjct: 123 RDVYWRLWGSVNILYCYRCGEYFPCCELGH 152


>SB_4978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 530 VVLERNSLIVLSVNKTIVCLCG 595
           VVL+ NSL+VL VN  + C  G
Sbjct: 83  VVLDVNSLVVLDVNSLVSCSIG 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,089,089
Number of Sequences: 59808
Number of extensions: 364378
Number of successful extensions: 853
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)