Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B20
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)                   29   3.8  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         29   5.0  
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)         28   6.7  
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)              28   6.7  
SB_36622| Best HMM Match : Entericidin (HMM E-Value=1.2)               28   6.7  
SB_22508| Best HMM Match : DM (HMM E-Value=8.1e-10)                    28   8.8  

>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 290  EINSIYKLNKSHISLLEEFGNIFKELKEENE 382
            E +S+Y LN+S  S LEEF N+    K+EN+
Sbjct: 1367 ERSSVYALNESSRSELEEFKNMNNNFKDEND 1397


>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 2/149 (1%)
 Frame = +2

Query: 164  WSLGLIASMKDPNSIIKNTEKVVVIKDKYPKAKVHYLVLPHEEINSIYKLNKSHISLLEE 343
            W+   I  M+   ++ +   KV++       A++ Y     E +     L  S+   +++
Sbjct: 875  WAPQAITDMRSVEALQRRATKVILTNS----AELTY----QERLEQANLLPLSYWHEIKD 926

Query: 344  FGNIFKELKEENESELRAGFHAIPSMQRMHMHVISTDMISTSLKTKIHWNSFCTKFFIPY 523
               ++K L       L   F  +PS+ R   H  S D+ +   KTK+  NSF  +  IP 
Sbjct: 927  LVFMYKCLNGHYNIPLSHYFKPLPSL-RSSRHRSSLDIATPLYKTKLFQNSFFDR--IPK 983

Query: 524  DELLQELKD--IGNIRKIPSELHTSLMKT 604
             + + E  D  IG+     +E H    +T
Sbjct: 984  SDTIDETDDNNIGSEELDQNEKHEDEAET 1012


>SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)
          Length = 432

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 173 GLIASMKDPNSIIKNTEKVVVIKDKYPKAKVHYLVLPHEEINSIYKLNKSHISLL 337
           G I   + P  I+   ++ +  +D  P+A  H LV+P + I  +   + S   LL
Sbjct: 9   GKIIRKEIPAEILHEDDQCLAFRDINPQAPTHVLVIPKKPIRQLSMADDSDEQLL 63


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 125 ILLPXIPSKTPK-HWSLGLIASMKDPNSIIKNTEKVVVIKDKYPKAKVHYLVLPHEEINS 301
           +L P  PS   K   SLG     K P+   K  E +V ++   P +K+     PHE+ +S
Sbjct: 591 VLHPTAPSVVQKTDTSLGQSYLSKLPSPQKKPLEDLVAVECAEPSSKLSSSATPHEKSSS 650

Query: 302 I 304
           I
Sbjct: 651 I 651


>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
          Length = 1907

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 461 STSLKTKIHWNSFCTKFFIPYDELLQELKD 550
           +T+ KT I + +FC KF     ELL+ LKD
Sbjct: 45  NTAEKTVIKYGTFCNKFLRCGLELLKSLKD 74


>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
          Length = 584

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +2

Query: 197 PNSIIKNTEKVVVIKDKYPKAKVHYLVLPHEEINSIYKL----NKSHISLLEEF 346
           PN+II + +++V  K +  KAKV  L   H  + S++      NK+  S ++EF
Sbjct: 191 PNAIIDHEKEIVKTKMEVVKAKVSDLSHAHANVFSLFSRLGAENKALTSEIDEF 244


>SB_36622| Best HMM Match : Entericidin (HMM E-Value=1.2)
          Length = 166

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 185 SMKDPNSIIKNTEKVVVIKDKYPK 256
           S KD N+ ++  EKVVVIKD   K
Sbjct: 85  SCKDANNNVQTIEKVVVIKDSVAK 108


>SB_22508| Best HMM Match : DM (HMM E-Value=8.1e-10)
          Length = 450

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 221 EKVVVIKDKYPKAKVHYLVLPHEEINSIYKLNKSHISLLEEF-GNIFKE--LKEEN 379
           E  +V+  ++   K + L  PH ++NS+ +   SH  LL  F G + KE  +KE+N
Sbjct: 130 EPHIVLGHRHASHKRYALTRPHTDLNSLVRPLPSH--LLRHFGGKMSKEWSVKEDN 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,388,668
Number of Sequences: 59808
Number of extensions: 304158
Number of successful extensions: 727
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)