Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B18
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11397| Best HMM Match : ECSIT (HMM E-Value=1.7e-24)                111   8e-25
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.44 
SB_51373| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.58 
SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)                31   0.77 
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)                29   3.1  
SB_3063| Best HMM Match : Lig_chan (HMM E-Value=5.4e-13)               29   4.1  
SB_34322| Best HMM Match : FeS (HMM E-Value=3.4)                       28   9.5  

>SB_11397| Best HMM Match : ECSIT (HMM E-Value=1.7e-24)
          Length = 316

 Score =  111 bits (266), Expect = 8e-25
 Identities = 51/144 (35%), Positives = 82/144 (56%)
 Frame = +2

Query: 326 KNKDTYLEAIKMFENQDNRRRGHVEFIYAALARMKEFGVHKDLQAYKALVDVLPKGKFIP 505
           K +D ++E ++ F   D  RRGH+E +  A+  M  +G+ KDL AY A++DV P+G+F  
Sbjct: 126 KTRDNFIEILESFSRHDRNRRGHMELLKTAMNYMDIYGLEKDLLAYNAMLDVFPRGRFQN 185

Query: 506 SNIFQAEFMHYPKQQQCAVDLLEQMEDNKVMPDSELEQMLLNVFGKRGIPLRKFWRMLYW 685
             +F A +     Q   A+++L +ME+N + P  E   +   +FGK   P++K  R+ YW
Sbjct: 186 RTLFDAVWPKKHPQVDLALEILTKMEENVIKPSIETYDICEEIFGKASQPVQKVRRLAYW 245

Query: 686 MPKFKNLSPWYLPDELPNDTLXLA 757
           + K + + P  LP ELP   L L+
Sbjct: 246 LTKLEEMFPSPLPAELPEGELELS 269


>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 678

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = +2

Query: 503 PSNIFQAEFMHYPKQQQCAVDLLEQMEDNKVMPDSELEQMLLNVFGKRGIPLRKFWRMLY 682
           P ++F A    Y + Q+ A    ++  ++K  P+ +LE++L N   KR IP+  F    +
Sbjct: 314 PKDLFNANLKAYYQMQELASSYFKRAHESK--PNEDLEEVLDN---KR-IPIFLFQLYKF 367

Query: 683 WMPKFKNL 706
           W P F  L
Sbjct: 368 WKPYFDEL 375


>SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +2

Query: 260 YRRWESSNTKVAVYDPFANKPKKNKDTYLEAIKMFENQDNRRRGHVEFIYAALARMKEFG 439
           Y+R      ++   +P A  P+K  D Y E   +    DNR + ++   Y AL ++ E  
Sbjct: 418 YKRIGLQAIEIYGENPIARNPRKVVDLYEEMTNLDLTPDNRSKSYIIMSYLALGKITEAD 477

Query: 440 VHKD 451
             K+
Sbjct: 478 AAKE 481


>SB_51373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +2

Query: 266 RWESSNTKVAVYDPFANKPK--KNKDTYLEAIK---MFENQDNRRRGHVEFIYAALARMK 430
           R    NT+V   D F  +P   + KD + + +K    ++NQD RR G     +  L    
Sbjct: 45  RKRHKNTRVDNEDDFKERPNAIRRKDLHRKRLKDPEKYKNQDERRGGSKSRSHHRLHAFD 104

Query: 431 EFGVHKD 451
           ++ VH+D
Sbjct: 105 KYDVHRD 111


>SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)
          Length = 923

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 197 ALPMATKILRHILRLPSSHFMYR-RWESSNTKVAVYDPFANKP 322
           A+    ++L  +   PSSHF+YR R+ + N  V+ + PF + P
Sbjct: 400 AMRRVCRVLSMLALSPSSHFLYRTRFTTPNRIVSTHPPFISLP 442


>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
          Length = 333

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 182 NNNQ*ALPMATKILRHILRL--PSSHFMYRRWESSNTKVAVYDPFANKP 322
           + N   +P A  +LRH +R    S+H ++  + S  +   V++P A  P
Sbjct: 95  HGNSTCIPDANLVLRHSIRSCHSSNHSVHNNYNSPISPAVVFEPLAENP 143


>SB_3063| Best HMM Match : Lig_chan (HMM E-Value=5.4e-13)
          Length = 880

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 328 FLWLISKRIIHSHFCV*AFPSSIHKMRRR 242
           F+W++S+ ++ +   + AFPS IH +R +
Sbjct: 248 FMWIVSENVVRNADELFAFPSGIHGIRAK 276


>SB_34322| Best HMM Match : FeS (HMM E-Value=3.4)
          Length = 554

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 533 HYPKQQQCAVDLLEQMEDNKVMPD 604
           HYP   +CA DL  Q   +K +PD
Sbjct: 235 HYPSDGECASDLTFQEGKDKTVPD 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,746,195
Number of Sequences: 59808
Number of extensions: 413947
Number of successful extensions: 869
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)