Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B12
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)              177   7e-45
SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_18586| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_58629| Best HMM Match : Homeobox (HMM E-Value=0.05)                 28   6.0  

>SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)
          Length = 603

 Score =  177 bits (431), Expect = 7e-45
 Identities = 87/156 (55%), Positives = 108/156 (69%), Gaps = 1/156 (0%)
 Frame = +2

Query: 203 LVIVSPNVKYSDDFIYADYEYNETLVK-KIDNQLVAQPYSKTLSIRTQRKVGKVGVMLVG 379
           L + SPNVKY+ ++I + Y Y+ T VK  + N     P     + RT+RKV +VG MLVG
Sbjct: 4   LNVCSPNVKYTPEYIESRYVYDTTEVKLDLKNSYTVTPKETIYTFRTERKVPRVGCMLVG 63

Query: 380 WGGNNGSTFTAAVLANRHQLSWNTKNGSLDANWFGSITQASTVRLGLDEKGNDVNVPMNS 559
           WGGNNG+T TA VLAN+  LSWNTK G   +N+ GS+TQASTV LG    G DV++PM  
Sbjct: 64  WGGNNGTTITAGVLANKMGLSWNTKEGLKKSNYVGSLTQASTVHLGSGPDG-DVHIPMKD 122

Query: 560 LLPMVNPDDLFIDGWDISPLNXAESMARAKVLDYDL 667
           LLPMVNPDD+  DGWDIS  N A++M RAKVLD+ L
Sbjct: 123 LLPMVNPDDIVFDGWDISSFNMADAMKRAKVLDWGL 158


>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 852

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = +2

Query: 569 MVNPDDLFIDGWDISPLNXAESMARAKVLDYDL 667
           MVNPDD+  DGWDIS  N A++M RAKVLD+ L
Sbjct: 1   MVNPDDIVFDGWDISSFNMADAMKRAKVLDWGL 33


>SB_18586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -1

Query: 426 LAKTAAVNVEPLLPPHPTSITPTLPTLR*VLM 331
           + KT+ +++ PLLPP P  +T  +PTL  +++
Sbjct: 709 IVKTSGLHISPLLPPPP--VTLPVPTLANIIL 738


>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4634

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +2

Query: 263  YNETLVKKIDNQLVAQPYSKTLSI-RTQRKVGKVGVMLVGWGGNNGSTFTAAVLANRHQL 439
            +  T ++  +N         TL + RT+  +G+V V++   GG  G T +A+  + R QL
Sbjct: 4127 FKTTSMRMPENATSGNTRVVTLEVQRTRGTLGEVSVLVRSVGGGEGWTSSASPQSLRDQL 4186

Query: 440  SWNTKNGS 463
            S  +++ +
Sbjct: 4187 SQRSQDNN 4194


>SB_58629| Best HMM Match : Homeobox (HMM E-Value=0.05)
          Length = 466

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -2

Query: 404 MLNHCC--HPIPLASLQLCQLYAES 336
           +L+ C   HPI + S+ LCQLYA++
Sbjct: 391 VLDECALTHPITVDSINLCQLYAKN 415


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,027,186
Number of Sequences: 59808
Number of extensions: 408408
Number of successful extensions: 888
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)