Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0096
         (455 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           27   7.4  
SB_8035| Best HMM Match : Complex1_17_2kD (HMM E-Value=4.2)            27   7.4  
SB_15871| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)              27   9.7  

>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 350  GG*TVHPVPAPFSTILLEINNIREGGRSQNLIYLFV 243
            GG  V P P  F  +LLE+  + E G    L+ + V
Sbjct: 1319 GGLFVAPNPIDFDVVLLELTRLDESGNVAVLVTIIV 1354


>SB_8035| Best HMM Match : Complex1_17_2kD (HMM E-Value=4.2)
          Length = 291

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 318 WCRNRMNSLPPTFI*YRT*RKIRRSCYFFTTFSRYFI 428
           +C NR   L      YRT  K+ R C +  T SR+F+
Sbjct: 11  FCANRCYLLVKVAAVYRT--KVNRECAYDVTLSRHFL 45


>SB_15871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -1

Query: 452 IKLIAPIIDEIPAKCSEKIAR 390
           IK++  ++D+  AKC+E++AR
Sbjct: 118 IKIVRTLVDDGMAKCNEEVAR 138


>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
          Length = 830

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 249 IRGNAISGAPSIRGTNQFPNPP 184
           + GN  S AP I G + FP PP
Sbjct: 335 LSGNLASTAPVISGQSSFPAPP 356


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,024,149
Number of Sequences: 59808
Number of extensions: 187751
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)