Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0095
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   5e-14
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              73   3e-13
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              72   4e-13
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              69   6e-12
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   2e-11
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        66   4e-11
SB_15557| Best HMM Match : Cu_amine_oxid (HMM E-Value=0)               31   1.4  
SB_46531| Best HMM Match : Cu_amine_oxid (HMM E-Value=0)               30   1.8  
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             29   4.1  
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)                     29   5.5  
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)                   28   7.2  
SB_14303| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
 Frame = +2

Query: 296 FRNFTSLRSKHPDVKFMVAVGGWA-EGG--SKYSHMVAQKSTRMSFIRSVVDFLKKYDFD 466
           ++    L+ K+P +K ++AVGGW  E G  S +S MVA KS R +FI S++    KYDFD
Sbjct: 455 YKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDFD 514

Query: 467 GLDLDWEYPGA 499
           G DLDWEYP +
Sbjct: 515 GFDLDWEYPAS 525



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +3

Query: 126 VCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSF 227
           VCYF+NWA YRP   ++  +DI   LCTH++Y+F
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLLCTHIVYAF 434


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
 Frame = +2

Query: 284 DKSGFRNFTSLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRSVVDFLKKY 457
           D   ++   +L+  +P +K  +AVGGW   E  S +S MVA K  R  FI+S ++ L+ +
Sbjct: 74  DHELYQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTH 133

Query: 458 DFDGLDLDWEYPG 496
            FDGLDLDWEYPG
Sbjct: 134 GFDGLDLDWEYPG 146



 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
 Frame = +2

Query: 296 FRNFTSLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDG 469
           ++   +L+  +P +K  +AVGGW   E  S +S MVA K  R  FI+S ++ L+   FDG
Sbjct: 463 YKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFDG 522

Query: 470 LDLDWEYPG 496
           LDLDWEYPG
Sbjct: 523 LDLDWEYPG 531



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 27  DEP*PLKMRAIFA-TLAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDL 203
           D P P     I A  LA+L  C          R VCY++NW+ YRP  G +  EDI   L
Sbjct: 376 DGPLPPNTSLIMARVLAILILCFVPFAVSEYVR-VCYYTNWSQYRPKGGTFWPEDIDPHL 434

Query: 204 CTHLIYSF 227
           CTH+I+SF
Sbjct: 435 CTHVIHSF 442



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 26/65 (40%), Positives = 38/65 (58%)
 Frame = +3

Query: 69  LAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEKS 248
           LAVL  CA  V +    R  CY++NW+ YRP  G +  EDI   LCTH+++SF  V + +
Sbjct: 7   LAVLG-CALSVTASEYVR-GCYYTNWSQYRPKGGTFWPEDIDPFLCTHILFSFAKVNQTT 64

Query: 249 SEFSL 263
            +  +
Sbjct: 65  HKLDI 69



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +1

Query: 508 GGSFSDKDKFLYFVQELKRAFIRAGR--GWE---LTAAVPLANFRLMEGYHVPELCQELD 672
           G   SDK +F    QEL+ AF    +  G E   LTAAV    + + + Y +  + + LD
Sbjct: 535 GSPKSDKGRFTLLCQELRDAFEAEAKDSGKERLLLTAAVAAGLWTIKDAYDIEGISKPLD 594

Query: 673 AI 678
            I
Sbjct: 595 WI 596


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
 Frame = +2

Query: 284 DKSGFRNFTSLRSKHPDVKFMVAVGGW--AEGGSKYSHMVAQKSTRMSFIRSVVDFLKKY 457
           D   +  F +L+ K+P++K ++AVGGW      S +S MV   +TR  FI SV+  L+ +
Sbjct: 71  DDKLYPRFNALKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTW 130

Query: 458 DFDGLDLDWEYP 493
            FDGLDLDWEYP
Sbjct: 131 GFDGLDLDWEYP 142



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +3

Query: 66  TLAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEK 245
           TL VLA  A    +  R   VCY +NW+ YR G  ++  EDIP DLCTHL+YSF  + +K
Sbjct: 5   TLLVLAVAACATGNYVR---VCYHTNWSQYRQGRAKFWPEDIPADLCTHLMYSFAKINQK 61

Query: 246 SSEFSLSILSW 278
           +    L++  W
Sbjct: 62  N---ELAMYEW 69


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
 Frame = +2

Query: 284 DKSGFRNFTSLRSKHPDVKFMVAVGGWAEGGSK--YSHMVAQKSTRMSFIRSVVDFLKKY 457
           D   ++ F  L+ K+P +K ++AVGGW     K  +S MV   ++R  FI S +  L+++
Sbjct: 183 DDKLYKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQW 242

Query: 458 DFDGLDLDWEYPG 496
           +FDG DLDWEYPG
Sbjct: 243 NFDGFDLDWEYPG 255


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 31/72 (43%), Positives = 44/72 (61%)
 Frame = +2

Query: 284 DKSGFRNFTSLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDF 463
           D + ++    L+S   ++K ++AVGGW  G   +  MV+  S R  FI   + FL+ + F
Sbjct: 74  DAAMYKKVNDLKSSS-NMKTLLAVGGWNMGSGPFQDMVSTASRRKIFIDDAILFLRNHMF 132

Query: 464 DGLDLDWEYPGA 499
           DGLDLDWEYPGA
Sbjct: 133 DGLDLDWEYPGA 144



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 26/70 (37%), Positives = 43/70 (61%)
 Frame = +3

Query: 69  LAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEKS 248
           L +L   ++L  S S  R VCY++NWA YR G+ +Y  ++I   LCTH++Y+F  +   +
Sbjct: 7   LPLLVVPSSLFASASYFR-VCYYTNWAQYR-GLAKYTPDNIDPSLCTHIVYAFAKMNADN 64

Query: 249 SEFSLSILSW 278
           S+  L++  W
Sbjct: 65  SK--LAMFEW 72


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 30/68 (44%), Positives = 42/68 (61%)
 Frame = +2

Query: 296 FRNFTSLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLD 475
           ++    L+S   ++K ++AVGGW  G   +  MV+  S R  FI   + FL+ + FDGLD
Sbjct: 2   YKKVNDLKSSS-NMKTLLAVGGWNMGSGPFQDMVSTASRRKIFIDDAILFLRNHMFDGLD 60

Query: 476 LDWEYPGA 499
           LDWEYPGA
Sbjct: 61  LDWEYPGA 68


>SB_15557| Best HMM Match : Cu_amine_oxid (HMM E-Value=0)
          Length = 1009

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 167 WTLWHRRHPRGFVYPLDLFLYWRH 238
           W  +HR HP  FVYPL   +Y  H
Sbjct: 477 WYAFHRDHPPMFVYPLPFEIYIDH 500


>SB_46531| Best HMM Match : Cu_amine_oxid (HMM E-Value=0)
          Length = 900

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 167 WTLWHRRHPRGFVYPLDLFLYWRH 238
           W  +HR HP  FVYPL   +Y  H
Sbjct: 314 WYAFHRDHPPLFVYPLPFEIYIDH 337


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +3

Query: 204  CTHLIYSFIGVTEKSSEFSLSIL-SWT*IRVVSVTSHPSAPNTPMSSSWSRLAVGLKAAP 380
            C+    +   +T  S+  + SIL S T     S+   P+    P+  +W+     L   P
Sbjct: 1318 CSQWGMAITRITLISNAITFSILASHTSFGTESLAPSPTPSKEPLGGTWANTRSSLTTTP 1377

Query: 381  STHTWWPRRALGCPSSEALSTS*RNMTST 467
            S  T     A   P+S  +S + +N TS+
Sbjct: 1378 SFPTTSLMLAPVTPASLIISQATKNATSS 1406


>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
          Length = 1470

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 681 WNSVQFLTQLWYMISLHQPEISKRYGSSQLPSSTG 577
           WN+ Q++T  W   +L QP + + +   Q  SS G
Sbjct: 501 WNTNQYVTNSWKSDNLAQPSVYQNWPGIQRSSSYG 535


>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 97   NAAQLARTANV-ANIARIFNGYGSSVXSARA 8
            N+ Q AR A+  A+IA +FNGY SSV    A
Sbjct: 1439 NSTQPARLASTPASIASLFNGYFSSVFGPSA 1469


>SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)
          Length = 660

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 97  NAAQLARTANV-ANIARIFNGYGSSVXSARA 8
           N+ Q AR A+  A+IA +FNGY SSV    A
Sbjct: 350 NSTQPARLASTPASIASLFNGYFSSVFGPSA 380


>SB_14303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 732 HIGENRPNLPRRSYDITWNSVQFLTQLWYMISLHQPEISKRYGS 601
           H  E RP  P R+  ++W   +  +   Y+ ++ + E  +  GS
Sbjct: 10  HFSERRPRRPARTRTLSWLPEELSSDADYLSTIPETEFGRATGS 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,225,989
Number of Sequences: 59808
Number of extensions: 609721
Number of successful extensions: 1484
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)