Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0068
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_23356| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +1

Query: 238 SKQIRPGHSIVLPTSFRAPVDHGVRDRSAPQRHSHVSSSLRYLFSEPLWTTVINIRPRPQ 417
           SK+  P H++ L         HGV  R+AP     VS   R     PL    ++ R  P 
Sbjct: 100 SKRTAPDHTLGLSKRTGPDHTHGVSKRTAPDHPLGVSK--RTAPDHPLG---VSKRTAPD 154

Query: 418 HRPS*SFRAPVDH--GVRDRSAPQH 486
           H    S R   DH  G+  R+AP H
Sbjct: 155 HTLGVSKRTAPDHPLGLSKRTAPDH 179



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +1

Query: 238 SKQIRPGHSIVLPTSFRAPVDHGVRDRSAPQRHSHVSSSLRYLFSEPLWTTVINIRPRPQ 417
           SK+  P H + +         HGV  R+AP  H H  S      + P  T  ++ R  P 
Sbjct: 172 SKRTAPDHPLGVSKRTAPDHPHGVSKRTAPD-HPHGVSK----HTAPDHTLGLSKRTGPD 226

Query: 418 HRPS*SFRAPVDH--GVRDRSAPQHQNPH 498
           H    S R    H  G+   +AP H  PH
Sbjct: 227 HTHGVSKRTAPHHPLGLSKHTAPDH--PH 253



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = +1

Query: 205 LNQFQSPCGPR--SKQIRPGHSIVLPTSFRAPVDH--GVRDRSAPQRHSHVSSSLRYLFS 372
           L++  +P  P   SK   P H+I L    R   DH  GV  R+AP     VS       +
Sbjct: 243 LSKHTAPDHPHGLSKHTAPDHTIGLYK--RTGPDHTLGVSKRTAPDHPLGVSKR-----T 295

Query: 373 EPLWTTVINIRPRPQHRPS*SFRAPVDH--GVRDRSAPQH 486
            P  T  ++ R  P H      R   DH  GV  R+AP H
Sbjct: 296 APDHTLGLSKRTAPDHTLGLFKRTGPDHTHGVSKRTAPDH 335



 Score = 27.5 bits (58), Expect = 7.0
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
 Frame = +1

Query: 238 SKQIRPGHSIVLPTSFRAPVDHGVRDRSAPQRHSHVSSSLRYLFSEPLWTTVINIRPRPQ 417
           SK+  P H + L  S      HGV  R+AP  H H  S      + P     ++    P 
Sbjct: 364 SKRTAPHHPLGLSKSTAPDHPHGVSKRTAPD-HPHGLSK----HTAPDHPHGLSKHTAPD 418

Query: 418 HRPS*SFRAPVDH--GVRDRSAPQH 486
           H    S     DH  G+  R+ P H
Sbjct: 419 HPHGLSKHTAPDHTLGLYKRTGPDH 443



 Score = 27.1 bits (57), Expect = 9.3
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +1

Query: 238 SKQIRPGHSIVLPTSFRAPVDHGVRDRSAPQRHSHVSSSLRYLFSEPLWTTVINIRPRPQ 417
           SK+  P H++ +         HG+  R+AP     +S S     + P     ++ R  P 
Sbjct: 340 SKRTAPDHTLGVSKRTAPDHPHGLSKRTAPHHPLGLSKS-----TAPDHPHGVSKRTAPD 394

Query: 418 HRPS*SFRAPVD--HGVRDRSAPQHQNPH 498
           H    S     D  HG+   +AP H  PH
Sbjct: 395 HPHGLSKHTAPDHPHGLSKHTAPDH--PH 421


>SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 223 PCGPRSKQIRPGHSIVLPTSFRAPVDHGVRDRSAPQRH 336
           P  PRSK   PG S+ LP   R+    G+  R AP  H
Sbjct: 214 PPSPRSKSPMPGQSLSLPQ--RSDSTEGLSVRPAPYSH 249


>SB_23356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 315 VSYAVVHRGSKGCRKDDA 262
           +SYA+ H G   CRKD A
Sbjct: 57  ISYAICHYGDYRCRKDQA 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,078,911
Number of Sequences: 59808
Number of extensions: 368367
Number of successful extensions: 756
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)