Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0031
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46037| Best HMM Match : Pept_C1-like (HMM E-Value=0)               103   2e-22
SB_10048| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_4687| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  

>SB_46037| Best HMM Match : Pept_C1-like (HMM E-Value=0)
          Length = 605

 Score =  103 bits (246), Expect = 2e-22
 Identities = 46/87 (52%), Positives = 65/87 (74%)
 Frame = +2

Query: 248 KK*LAQNVCTRYDPFEVAINRRKTDTSLHVFNLKIETEGKPVTNQESSGRCWLFAALNVM 427
           K  LAQN  + +D  ++ I+R+  + + HVF  K++ E KP+TNQ+SSGRCW+FA LNV+
Sbjct: 27  KNSLAQNFASNHDVLDLCIDRKVVEKTNHVFTHKVK-EVKPMTNQKSSGRCWIFALLNVI 85

Query: 428 RLPFMKKYGIEEFEFSQSYLFFWDKIE 508
           R  F+++  ++EFEFSQ YLFFWDKIE
Sbjct: 86  RQKFVQEKNLDEFEFSQQYLFFWDKIE 112



 Score = 98.3 bits (234), Expect = 6e-21
 Identities = 42/72 (58%), Positives = 57/72 (79%)
 Frame = +1

Query: 508 RSHFWLNNIVETAKKGEKLDGRVVNFLLKDPVNDGGQWDMLVNLVNKYGLMPKKCFPESY 687
           RS+F++N  ++ AKKGEK D R+  FLL +P+NDGGQWDMLVNL+ KYG+MPK  +PES 
Sbjct: 113 RSYFFINAFLDLAKKGEKPDSRLFMFLLSNPMNDGGQWDMLVNLIEKYGIMPKAAWPESV 172

Query: 688 SSRRSVRMNALL 723
           +S ++ RMN +L
Sbjct: 173 NSGKTRRMNVIL 184


>SB_10048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 605 LTGSLSKKFTTLPSSFSPFLAVSTMLFNQKC 513
           LTGS+ ++   LP + + FLAVS +   QKC
Sbjct: 158 LTGSIQRQLNLLPPAIASFLAVSPLGTAQKC 188


>SB_4687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = -3

Query: 378 LVTGFPSVSILR--LKT*SEVSVFRLLMATSNGSYRVQTF*ANYFLVLHKNLCGFLIALL 205
           LV GF +V  L+  +K   E+S+ RL + T+ G+Y +  F     +V  + LC F+ AL 
Sbjct: 167 LVMGFGAVFGLKFLVKWIDELSISRLGLLTTIGTYVLFGFSTTRAMVFIETLCSFIGALT 226

Query: 204 M 202
           +
Sbjct: 227 L 227


>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1312

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 603 QRRRPVGHAGEPREQIRANAEEVLPGVVQLEAECAHER 716
           Q  R      E RE+ R  A+E +   +QLE E A ER
Sbjct: 849 QNARMQAELEEAREEARIQAQEEIMKQIQLEKEAAQER 886


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,621,972
Number of Sequences: 59808
Number of extensions: 418589
Number of successful extensions: 1068
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)