Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0015
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33735| Best HMM Match : Aminotran_1_2 (HMM E-Value=0.13)            64   1e-10
SB_32349| Best HMM Match : Aminotran_1_2 (HMM E-Value=0.00025)         58   5e-09
SB_13997| Best HMM Match : EGF_CA (HMM E-Value=1.2e-05)                29   2.0  
SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7)                   29   3.5  
SB_36977| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_30395| Best HMM Match : zf-C2H2 (HMM E-Value=1.6)                   28   4.6  
SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)                     28   6.1  
SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)                 28   6.1  

>SB_33735| Best HMM Match : Aminotran_1_2 (HMM E-Value=0.13)
          Length = 383

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/77 (37%), Positives = 44/77 (57%)
 Frame = +2

Query: 287 IHQVLKERTATAYKTFNSIPGYFCNPIDGSMFAYPRIEIPVEAQLEAKKLNMSPDEFYCL 466
           I + +KE+     +  NS+ G  CN + G+M+A+PR+ +P +A   AK   ++PD  Y  
Sbjct: 268 IQKSMKEKAGMTTRFLNSLAGIQCNTVQGAMYAFPRVLLPDKAIQAAKDQGLTPDSLYAS 327

Query: 467 RLLEETGVCVIPGTDSG 517
            LLE TG  V PG+  G
Sbjct: 328 ELLEATGQFVAPGSVMG 344



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +3

Query: 90  WAAECGLRSGYVELLHLQPSVQKTFNIMRSVMQCPSVLGQCILDCVMKPPSPG 248
           +A  C LR GY +L      V+  F+   ++  CP++ GQ  +  V +PP PG
Sbjct: 202 FAIRCALRGGYYQLTGFDEDVKSFFHNRMTLYSCPNIYGQVAMGIVCQPPKPG 254


>SB_32349| Best HMM Match : Aminotran_1_2 (HMM E-Value=0.00025)
          Length = 420

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 22/53 (41%), Positives = 31/53 (58%)
 Frame = +3

Query: 90  WAAECGLRSGYVELLHLQPSVQKTFNIMRSVMQCPSVLGQCILDCVMKPPSPG 248
           W   CG R GY+E++ L P V+   N M S   C  + GQ ++DC++ PP PG
Sbjct: 253 WQTRCGFRGGYMEIVGLDPEVKFHLNKMLSAKLCSCITGQAMMDCLVNPPRPG 305



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 24/63 (38%), Positives = 38/63 (60%)
 Frame = +2

Query: 257 HNQFINEIRDIHQVLKERTATAYKTFNSIPGYFCNPIDGSMFAYPRIEIPVEAQLEAKKL 436
           +++F  E   +    KER     KTFNS+ G  CN   G+M+++PR+E+P +A + AK L
Sbjct: 309 YDEFTKEKEAVLASFKERAQLITKTFNSVEGIQCNESMGAMYSFPRLELPHKAVVAAKAL 368

Query: 437 NMS 445
           + S
Sbjct: 369 SFS 371


>SB_13997| Best HMM Match : EGF_CA (HMM E-Value=1.2e-05)
          Length = 770

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 7/162 (4%)
 Frame = -1

Query: 511 IRTXDHTHSSFLQQPKAVELIRTHI*FFCF*LGLYWNFYTRICEH*TVDWIAEVSRY*VE 332
           ++  D  + S    P +   + TH  ++C   G  WN   R      ++W+++   +  +
Sbjct: 404 LQDVDECNGSSHGCPSSASCVNTHGSYYCTGYGAPWNLVARFSNADALNWMSDDGLWWFD 463

Query: 331 GFVSGCSAFL*YLVNVSNLIDELIVWGFPGDGGFITQS--KMHCP--KTEGHCMTDLIIL 164
             +SG    L   +N S++I  L  W   G    +T+S    + P   T G C+  + + 
Sbjct: 464 -LLSGVGDQLNPTIN-SDMISPLF-WTKSGHKIKVTRSDDPTNTPLLVTTGDCLGGMTMR 520

Query: 163 KVFCTDG--WRCSSSTYP-DLKPHSAAQPFEAVKKLANSMRE 47
            +  + G   R  S ++P D   HS A  +  +  + N   +
Sbjct: 521 GLLTSFGNTKRDGSDSWPMDSCRHSCAVTYGGLYNITNGFEQ 562


>SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7)
          Length = 856

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 260 NQFINEIRDIHQVLKERTATAYKT-FNSIPGYFCNPIDGSMFAYPRIEIPVEAQLEAKKL 436
           +++   I  +HQ  + R      T +  IPGY+  P      AYP I+IP   Q  + K 
Sbjct: 685 SEYPGTINLVHQ--RHRNTRVLSTLYIEIPGYY-QPCTSKTSAYPDIQIPGHFQPSSSKT 741

Query: 437 NMSP 448
           +  P
Sbjct: 742 SEYP 745


>SB_36977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 212 HFGLRDEASVSRKTPHNQFINEIRDIHQVLKERTATAYKTFNSIPGYFCNPIDGSMFAY- 388
           HFG+ D  SV +K P N      ++  +    +  ++      +PGY  + + G + AY 
Sbjct: 121 HFGMEDTTSVPQKMPEN-LKKSSKEAQRTWLHKEISSMLELLVMPGY--SRLPGIISAYH 177

Query: 389 PRIEIP 406
           PR ++P
Sbjct: 178 PRPDLP 183


>SB_30395| Best HMM Match : zf-C2H2 (HMM E-Value=1.6)
          Length = 755

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 212 HFGLRDEASVSRKTPHNQFINEIRDIHQVLKERTATAYKTFNSIPGYFCNPIDGSMFAY- 388
           HFG+ D  SV +K P N      ++  +    +  ++      +PGY  + + G + AY 
Sbjct: 433 HFGMEDTTSVPQKMPEN-LKKSSKEAQRTWLHKEISSMLELLVMPGY--SRLPGIISAYH 489

Query: 389 PRIEIP 406
           PR ++P
Sbjct: 490 PRPDLP 495


>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
          Length = 1452

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +2

Query: 125 GATASPAISAKNLQYNEVCHAVPL--GFGTMHFGLRDEASVSRKTPHNQFINEIRDIHQV 298
           G T  PA+  K      +    P   GFG++   L+   S+  + P   FI  + + H+V
Sbjct: 433 GVTEFPAVDVKGAPRELLEKVTPPYNGFGSLEDSLQSCLSLVPQPPKKDFIKMLENDHKV 492

Query: 299 LK 304
           L+
Sbjct: 493 LR 494


>SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)
          Length = 1193

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 287 IHQVLKERTATAYKTFNSIPGYFCNPIDGSMFAYPRIEIPVEAQLEAKKLNM 442
           IHQ L E     Y+  N+     C PI  +  +   +E+  E Q EA  + M
Sbjct: 63  IHQRLSEGKGLTYEYNNTDSRTTCEPIQMANSSEETLELQKEVQAEASYMQM 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,713,762
Number of Sequences: 59808
Number of extensions: 436278
Number of successful extensions: 1225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)