Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0134
(447 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 68 4e-12
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 4e-04
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.012
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 27 7.1
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 67.7 bits (158), Expect = 4e-12
Identities = 33/67 (49%), Positives = 38/67 (56%)
Frame = -2
Query: 446 DITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFFTIFIGVNI 267
D+ +HDTYYVVAHFHYVLS + TG N KI F+ +FIGVNI
Sbjct: 68 DVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNI 127
Query: 266 TFFPNIF 246
TFFP F
Sbjct: 128 TFFPQHF 134
Score = 41.1 bits (92), Expect = 4e-04
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Frame = -1
Query: 315 LYTKNSIFYNIYWSKYNIFSKHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 136
LY K + F +HFLGLAG PRRYSD+ D
Sbjct: 112 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 171
Query: 135 XXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELP 10
+ + + + N S S+E Q PPA H+YNELP
Sbjct: 172 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELP 217
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 41.1 bits (92), Expect = 4e-04
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Frame = -1
Query: 315 LYTKNSIFYNIYWSKYNIFSKHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 136
LY K + F +HFLGLAG PRRYSD+ D
Sbjct: 26 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 85
Query: 135 XXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELP 10
+ + + + N S S+E Q PPA H+YNELP
Sbjct: 86 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELP 131
Score = 36.7 bits (81), Expect = 0.009
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = -2
Query: 335 TGLSLNSYILKIQFFTIFIGVNITFFPNIF 246
TG N KI F+ +FIGVNITFFP F
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHF 48
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 37.9 bits (84), Expect = 0.004
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = -1
Query: 252 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 76
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 75 LPS---SIE*YQNLPPAEHSYNELP 10
S S+E Q PPA H+YNELP
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELP 85
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 37.9 bits (84), Expect = 0.004
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = -1
Query: 252 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 76
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 75 LPS---SIE*YQNLPPAEHSYNELP 10
S S+E Q PPA H+YNELP
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELP 85
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 37.9 bits (84), Expect = 0.004
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = -1
Query: 252 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 76
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 75 LPS---SIE*YQNLPPAEHSYNELP 10
S S+E Q PPA H+YNELP
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELP 85
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 37.9 bits (84), Expect = 0.004
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = -1
Query: 252 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 76
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 75 LPS---SIE*YQNLPPAEHSYNELP 10
S S+E Q PPA H+YNELP
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELP 85
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 37.9 bits (84), Expect = 0.004
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = -1
Query: 252 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 76
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 75 LPS---SIE*YQNLPPAEHSYNELP 10
S S+E Q PPA H+YNELP
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELP 85
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 36.3 bits (80), Expect = 0.012
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1
Query: 252 HFLGLAGIPRRYSDYPD 202
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 348 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSK 253
+ FIY + FL +KN F+ YW+ YN F +
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQ 47
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 77 ISHHQLNDIKIYHQQNIHIMNY 12
I+HHQ + I I H Q+ I+NY
Sbjct: 296 INHHQSSSIIINHHQSSSIINY 317
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,983,077
Number of Sequences: 59808
Number of extensions: 139259
Number of successful extensions: 267
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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